Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01520 ATGGACACTTACTATACTAGTTCAAGTAACCATAGAGAAGCAGCACAAGTGCTCTACGTGAGAGAGCCTTTTCATAATTCATTTCCCGAAGCACCTGCCCTTCCTGGCAATATGATGATGTATTTAAATTCAGGGCCTTATTCAGATGCATTATCTGAAAATTCTCAACTGAAAACAAATTATGTTGCTGTCCCTACAATTGGATCTTCAAATTCAACGTTGCAGCAGCAAGAAATCTTAACTAATCTTGGTGGATTAAGAACGGTACAGGAGGATGTTGGTGCATGGAGGGAAGGAAGGAATGAGATGCTTGTCCTGAATCCAACAGCTGCGCAGAATATGCTGAGTCAGGGATTATCGCTTAGCCTTGGAACTGAAATGCCATCAGACATTCAGATGGCTTCGATGCCCGGAGGTAATACTACTGCAGGCGTTGCGTCATTTTTGAGTCCTAATTCGTCGACATCGGGTGAAGTTGGAAATAGAGTTGACTCAACTAGAGACGATCACTTTAGGAATCGAGACTATTTGTCTTCTGGTTTTCCTGGAGGGCACCAAGATTTTAATAAAGGGGATTATTCTTTGTATGGAATGCCAGATGTTGCTAGAACAATTCCTAATTCAAAGTACCTCAAGGCAGCACAGCAGCTTCTTGATGAAGTTGTTAATGTCTGTGTCTCATCAAAGTTATCTGGTGATAAGAAAAATCAAAGTTCGCTTGAGGATGCACTGAGAAGTTCCAAGGACAGTGATGGTCGGCAGAAAGATGATACTACATCAGGTGTATCTCCCAATCCGCGGGATTCGTCAAGCAACTCCCAGTGCGAGCTTTCACATTCTGAAAGACAAGAATTGCAGAATAAGTTGACAAAGCTTTTGTCAATGTTGGATGAGGTTGATAGAAGGTACAGACAGTATTATCACCAAATGCAGGTTGTGGTATCATCTTTTGATGCTATAGCTGGATGTGGAGCTGCCAAACCATACACTTCCGTAGCACTCCAAACAATTTCTCGCCATTTTCGTTGCTTGCGTGATGCAATCACCGGTCAAATCCGGGCAAACCAGAGAAGCCTTGGAGAGCAAGATTCTTCATGGAACGGTAATGACATTGGAATAACTCGGCTAAGGTTTGTGGATCAGCAGCTCCGTCAACAGAGGGCTCTCCAGCAGATTGGAATGATGCAACAAAATGCATGGAGGCCACAGAGGGGGCTGCCTGAAAGCTCTGTACTAATTCTGCGTGCTTGGCTCTTTGAGCACTTTCTTCACCCATATCCCAAGGACTCAGATAAGATCATGCTAGCGAGACAGACTGGTTTGACCAGAAGTCAGGTATCAAACTGGTTCATAAATGCAAGAGTGCGTCTTTGGAAGCCCATGGTTGAGGAGATGTACAAAGAAGAGCTTGGTGATGAGATGGACTCCATTTCTTCTTTTGAAACTGCTGGCAAGGCAACAAAGGGGGATGCTACAGCTCATGAGGGCAGAGTTGATGACTTGAAGCAAAATCGAAGTGCAACAACCAGTGAGAGATATAAGACTGGAAATCTTATGGACTCAAATCTTGATGTCGTTCCTGATCTCGAAACCGCTGGGTCTGCAGAGTTTACTAATATACACATTACCAATTGTGTGAATCATGAAGGCAGAACTGACTATGGGATGTTGAGACAGACAGAGGAACAAAGGTCCAATGTTGATGACTGCAGTATGTTTTCTGATGCCATTGTCCATTCTGGTGGGGGTGGTGACAATAAGTTGATGGCAGCAGCTGCTGCAGCATATCACATCTCAGAGTTGGAAAGGTTTGGAACAGGAAATGGAGTATCACTCACATTACGTTTGCAGCATTGTGAGGATGGCAACTCACATATGACTAGTGGAGGTCAAGGTTTTGTGCCCATGAGAGTGGATGACATGTACGATGCAGCTTCTTCTTCTCTGAGAGCTGAAACTGCAGAACTTGAATGTGTAGGTACTGGGAACCAGCAAAGAAGGTTTAGTTCTTCTCATTTGGTCCATGGTTCGCTGTACAAAGATCATTAG 2049 0.4397 MDTYYTSSSNHREAAQVLYVREPFHNSFPEAPALPGNMMMYLNSGPYSDALSENSQLKTNYVAVPTIGSSNSTLQQQEILTNLGGLRTVQEDVGAWREGRNEMLVLNPTAAQNMLSQGLSLSLGTEMPSDIQMASMPGGNTTAGVASFLSPNSSTSGEVGNRVDSTRDDHFRNRDYLSSGFPGGHQDFNKGDYSLYGMPDVARTIPNSKYLKAAQQLLDEVVNVCVSSKLSGDKKNQSSLEDALRSSKDSDGRQKDDTTSGVSPNPRDSSSNSQCELSHSERQELQNKLTKLLSMLDEVDRRYRQYYHQMQVVVSSFDAIAGCGAAKPYTSVALQTISRHFRCLRDAITGQIRANQRSLGEQDSSWNGNDIGITRLRFVDQQLRQQRALQQIGMMQQNAWRPQRGLPESSVLILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEELGDEMDSISSFETAGKATKGDATAHEGRVDDLKQNRSATTSERYKTGNLMDSNLDVVPDLETAGSAEFTNIHITNCVNHEGRTDYGMLRQTEEQRSNVDDCSMFSDAIVHSGGGGDNKLMAAAAAAYHISELERFGTGNGVSLTLRLQHCEDGNSHMTSGGQGFVPMRVDDMYDAASSSLRAETAELECVGTGNQQRRFSSSHLVHGSLYKDH* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01520 682 SMART HOX_1 400 464 IPR001356 GO:0003677
Pte9g01520 682 MobiDBLite consensus disorder prediction 488 507 - -
Pte9g01520 682 Coils Coil 282 302 - -
Pte9g01520 682 MobiDBLite consensus disorder prediction 257 280 - -
Pte9g01520 682 ProSiteProfiles 'Homeobox' domain profile. 397 460 IPR001356 GO:0003677
Pte9g01520 682 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 122 486 - -
Pte9g01520 682 MobiDBLite consensus disorder prediction 485 514 - -
Pte9g01520 682 Pfam Associated with HOX 205 349 IPR006563 -
Pte9g01520 682 Pfam Homeobox KN domain 417 456 IPR008422 GO:0003677|GO:0006355
Pte9g01520 682 SMART prehox3 199 350 IPR006563 -
Pte9g01520 682 MobiDBLite consensus disorder prediction 231 281 - -
Pte9g01520 682 SUPERFAMILY Homeodomain-like 401 467 IPR009057 -
Pte9g01520 682 MobiDBLite consensus disorder prediction 151 170 - -
Pte9g01520 682 MobiDBLite consensus disorder prediction 235 256 - -
Pte9g01520 682 Gene3D - 395 474 - -
Pte9g01520 682 CDD homeodomain 400 461 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01520 Pte-Chr9 36340213 36345686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01520 27 675 Homeobox Transcription Factor Family AT4G34610 41.416 1.78e-133 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte9g01520 POX 2.3e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01520 - - qsu:112032203 848.58