Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01519 ATGGAATCAGCAGTTGATGTGTTGCCGAGCAATTTTTCCACATCCAGGGCATTCTTTCCAAAGGGACACAAAAGACTAAAACCATCCAAACATGATGAAGATTATGATGGCATGCCCCTTTCTCCGTGTATACGTGGTGTTAGTAGTGATGAGAAGAAACCAACATTTCCTACGAATGTCGTAGATTACTCTGATCCTTTTGCATACTCTGACTTGTTTGATCGATTTGAAAGTGGTAAATTTGGGAGTGTCACAAAGGACATACAGGCTCTTGTGGCTCGAAGAACACAGATGCTGAGCGGTTATTTTGCAAAATACCCTATGCTTTCAGACACATTACTGGAACCGCAAAAGGATCATTATAATGAAACTGAGAAAAGCTTCTCAGATTCAAAGGTGGGACATGGTAAGAGTGATGTTCCAGCAGCATCCTTGCATGTTGTAATAATTGATTCAGATGAGGAAGATGTCCAAGACCAGAAGCCTTCTTGTCCATTTCAGGAAGTTGTCTTGATGAAACCGGCAGGACAGTTTCTGTTGAAGGATATGGCTGATTATCAAGCTAGAATTGAGTGCTTTAAAGAGAATGTAGTACATTTTGGAGGAAACGCAAGCACTGCTCCCAAAGATAGAAAGAACAGGGATGAAGGTGTTTATTTAGGTGTGGAAGAACATGCTCCACAAACAGCAGATGATGGTCTGGGTGACATTTGGAAAGAGATGTCGATGGCATTAGAATGTTCGAAGGCCATTCCCTCCAATCCTTTACCCGATGAACAGGAGAGTGAAGATGATGATGACTGTGATCATTCTTTTATTTTGAAGGATGATATTGGTTATGTTTGTCGTATTTGTGGGATTGTTGACAAAAGAATAGAAACCATATTTGAGTTCCAGTTCAATAAGGTTAAAAAGAGTACAAGAACTTACATGCGGGATTCTTGGCAAACTAAAGATAAGGAATATTATGAGGAAAAGGGACTTGAATTCCCTGGTGACAATTTGTTAGTAACTGAAATCGCTGCTCACCCGAGGCATGCAAAGCAGATGAAACCTCATCAAGTGGAAGGATTTAATTTTCTTGTAAGCAATCTTGTGGGTGACAATCCGGGGGGTTGCATCTTGGCTCATGCTCCTGGGTCTGGGAAGACATTTATGATTATCAGTTTCATGCAGAGTTTCCTAGCAAAATATCCTAATGGCAGACCACTTGTCATTCTGCCAAAGGGGATTTTGGCAACATGGAAGAAGGAATTTCAAATTTGGCAAGTAGAAGATATGCCACTCTATGATTTCTACTCGGTGAAAGCAGATACCCGATATCAGCAGTTGGATGTATTGAAAAGGTGGGTGGAAAACAAGAGCATCCTTTTCTTGGGTTACAAACAGTTCTCATCAATTGTATGTGACAGTGATACTAGCAAGGCATCTATGGCATGCCAAGATATATTACTCAAGGCTCCTTCAATTCTTATATTAGATGAGGGGCACACCCCAAGGAATGAGAATACTGACGTGTTGCAGTCCCTAGCTAAAGTACAAACCCCAAGGAAAGTAGTGCTGTCTGGAACTCTATACCAGAACCATGTCAAGGAGGTTTTCAACATTTTAAATCTTGTACGTCCAAAGTTTTTACGTCTAGAATCTTCTCGAACTATTGTAAAGAGGATTTTGAGTAGAGTACATATTCCAGCTGTGAGGAAGCAATTCAAATCCGGCGTTGATACAGCTTTTTATGAACTGGTTGAGCACACTTTACAGAAGGATACTGATTTCAAAAGGAAAGTGAATGTCATACAAGATTTGCGTGAGATGACTAGCAACGTCCTCCATTATTACAAAGGAGATTTCCTTGACGAGCTTCCTGGTCTTGTTGATTACACTGTAGTGCTTAATTTGAGTTCTAAACAGAAGCATGAAGCTCAGAAATTGAAGCACTTGGCAAGGAAGTTTAAGATAAGTTCTGTAGGGAGTGCTGTTTATCTTCACCCAAAACTAAATTCTTTCTCCGAAAATAGTGCGATAACTGATAGTATGATGGATGATATGATAGAAAAGATAGATGTGAAAGATGGGGTGAAGGCAAAATTCTTTCTTAATGTGCTAGGTCTGTGTGAATCAGCTGGAGAGAAGCTACTGGTTTTCAGCCAATACCTCCTACCCTTGAAATTTTTAGAGAGGTTAGCTGCGATGAAAAAGGGTTGGAGCCCTGGTCGAGAAATCTTTGTGATCTCAGGAGAATCTAGCTCTGAGCATCGAGAATGGTCTATGGAGCGCTTCAATAATTCACCTGATGCCAAAGTATTTTTTGGTTCAATTAAGGCATGTGGAGAGGGCATATCCTTGGTGGGGGCATCGCGCGTCATAATTTTGGACGTTCACCTCAATCCTTCAGTCACCCGCCAAGCAATAGGTCGTGCCTTCCGCCCTGGCCAAACTAAAAAAGTTTATTGCTATCGACTGCTTGCTGCAGCTACCCCAGAAGAGGATGATCACCGGACCTGCTTCAAGAAGGAATTAATTGCCAAGATGTGGTTTGAATGGAACGAGTATTGTGGTTACCAGAATTTTGAAGTGGCGACAATTGATGTGGAAGAGAGTGGTGATCTATTTCTGGAAAGTCCTCTGTTGCGGGAAGATATAAAGGTTCTGTATAAAAGGTAG 2664 0.4122 MESAVDVLPSNFSTSRAFFPKGHKRLKPSKHDEDYDGMPLSPCIRGVSSDEKKPTFPTNVVDYSDPFAYSDLFDRFESGKFGSVTKDIQALVARRTQMLSGYFAKYPMLSDTLLEPQKDHYNETEKSFSDSKVGHGKSDVPAASLHVVIIDSDEEDVQDQKPSCPFQEVVLMKPAGQFLLKDMADYQARIECFKENVVHFGGNASTAPKDRKNRDEGVYLGVEEHAPQTADDGLGDIWKEMSMALECSKAIPSNPLPDEQESEDDDDCDHSFILKDDIGYVCRICGIVDKRIETIFEFQFNKVKKSTRTYMRDSWQTKDKEYYEEKGLEFPGDNLLVTEIAAHPRHAKQMKPHQVEGFNFLVSNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLAKYPNGRPLVILPKGILATWKKEFQIWQVEDMPLYDFYSVKADTRYQQLDVLKRWVENKSILFLGYKQFSSIVCDSDTSKASMACQDILLKAPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLRLESSRTIVKRILSRVHIPAVRKQFKSGVDTAFYELVEHTLQKDTDFKRKVNVIQDLREMTSNVLHYYKGDFLDELPGLVDYTVVLNLSSKQKHEAQKLKHLARKFKISSVGSAVYLHPKLNSFSENSAITDSMMDDMIEKIDVKDGVKAKFFLNVLGLCESAGEKLLVFSQYLLPLKFLERLAAMKKGWSPGREIFVISGESSSEHREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQTKKVYCYRLLAAATPEEDDHRTCFKKELIAKMWFEWNEYCGYQNFEVATIDVEESGDLFLESPLLREDIKVLYKR* 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01519 887 CDD SF2_C_SNF 685 822 - -
Pte9g01519 887 Gene3D - 622 871 IPR027417 -
Pte9g01519 887 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 219 886 IPR044567 GO:0080188
Pte9g01519 887 SMART helicmild6 723 811 IPR001650 -
Pte9g01519 887 Gene3D - 316 576 IPR038718 -
Pte9g01519 887 Pfam SNF2-related domain 370 653 IPR000330 GO:0005524|GO:0140658
Pte9g01519 887 SMART ultradead3 346 554 IPR014001 -
Pte9g01519 887 Pfam Helicase conserved C-terminal domain 698 810 IPR001650 -
Pte9g01519 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 560 IPR027417 -
Pte9g01519 887 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 865 IPR001650 -
Pte9g01519 887 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 364 543 IPR014001 -
Pte9g01519 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 849 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01519 Pte-Chr9 36334061 36339986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01519 700 829 RAD5 or RAD16-like Gene Family AT1G11100 36.923 4.49e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte9g01519 SNF2_N 1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01519 K10875 - qsa:O6P43_011561 1265.37