Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01467 ATGCCGCGCCCTTTTTTTCATAAGCTTATTGTTCCTTCAACCATCCAAGCCAGACAACTCAGGATCCCAGAAAATTTCTTGAGGAAATTCAGGGATGGGCTTTCCAACGTCTCAACCCTTACTCTTCCGGATGGCCAAGCCTGGCGAATAGGTTTAAAGAAAGCAGACAATAAAGTCTGGTTTTATGATGGTTGGCAGAATTTTTCTGAACGCTACTCCATTCGTGTTGGATACCTTTTGGTGTTCAGATATGAAGGAAATTCGTCTTTTACTGTTTATATTTTCAATTTGGTTGCTTCTGAGATTAGTTATCAGTCTCCCACTCTAGTCAATTCTCAAGGGTCATACTTTGCCAATCAACATCGAATATTTGATGAAATGGAAGATGAAGACTCTGTTGACATCATTGGTTCACTTTCGGGTCTGACACATGGAGCTGTGCTAAACAGATCTGTAGCTGCATCCGCAGAACACATGATTGCTGGAAAGAGTTATGGTAATTCTTCACCTCTGCAGAATTTGTTCAATGGGTCTAGACTTGATTATGTAAAATGGGGAGACAGTGGAAACCTGCATACTTCACAGGGTTCTGAAATTTCCACCAAGGACATAGGTGTACAGTTCAATGCAACAGAATTTAAGAGGTCTGCTGATGAAGTGAGATTGCTTGGTTCTAATCCCGAGACAGAGGTGCCTGAGGCCAAAAAACAAGGACGAAAGAAGCGCAAAGTTGATCCTAATGAAGAGGAATCGCCTGTTCACCATGGCGATGAAACAGACATGCGCATTAGATTTTATGAAAGTGCCTCTGCAAGGAAAAGAACTGTGACTGCAGAAGAAAGAGAGAGGGCTGTTAATGCAGCTAAAACATTCGAGCCTCCTAATCCTTTCTGTAGGGTGGTCCTTCGGCCATCCTATCTATATAGAGGATGTATAATGTACTTACCATCCTGCTTTGTGGAGAAGCATCTGAATGGTGTTTCCGGATTCATTAAGCTGCAGCTTTCTGATGGAAGGCAGTGGTCAGTCAGATGTCTCTATAGAGGTGGTAGAGCCAAATTAAGCCAGGGTTGGTATGAATTTACGTTGGAGAACAATTTAGGGGAAGGTGATGTATGTGTGTTTGAGCGGCTGATGATGAAGGATGTTGTACTGAAAGTTACATTATTCAGAGTGATGGAGGAGGCAGGACTGTTGACCAATCCAGTACAGTCACATGATATGAGCCAGAGTAAATTGATTAGAACCTAG 1251 0.4253 MPRPFFHKLIVPSTIQARQLRIPENFLRKFRDGLSNVSTLTLPDGQAWRIGLKKADNKVWFYDGWQNFSERYSIRVGYLLVFRYEGNSSFTVYIFNLVASEISYQSPTLVNSQGSYFANQHRIFDEMEDEDSVDIIGSLSGLTHGAVLNRSVAASAEHMIAGKSYGNSSPLQNLFNGSRLDYVKWGDSGNLHTSQGSEISTKDIGVQFNATEFKRSADEVRLLGSNPETEVPEAKKQGRKKRKVDPNEEESPVHHGDETDMRIRFYESASARKRTVTAEERERAVNAAKTFEPPNPFCRVVLRPSYLYRGCIMYLPSCFVEKHLNGVSGFIKLQLSDGRQWSVRCLYRGGRAKLSQGWYEFTLENNLGEGDVCVFERLMMKDVVLKVTLFRVMEEAGLLTNPVQSHDMSQSKLIRT* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01467 416 Gene3D - 2 97 IPR015300 -
Pte9g01467 416 SUPERFAMILY DNA-binding pseudobarrel domain 291 391 IPR015300 -
Pte9g01467 416 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pte9g01467 416 ProSiteProfiles B3 DNA-binding domain profile. 298 393 IPR003340 GO:0003677
Pte9g01467 416 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pte9g01467 416 SMART B3_2 6 98 IPR003340 GO:0003677
Pte9g01467 416 SMART B3_2 298 393 IPR003340 GO:0003677
Pte9g01467 416 MobiDBLite consensus disorder prediction 219 259 - -
Pte9g01467 416 Gene3D - 275 395 IPR015300 -
Pte9g01467 416 CDD B3_DNA 296 391 IPR003340 GO:0003677
Pte9g01467 416 MobiDBLite consensus disorder prediction 232 259 - -
Pte9g01467 416 Pfam B3 DNA binding domain 301 391 IPR003340 GO:0003677
Pte9g01467 416 Pfam B3 DNA binding domain 5 96 IPR003340 GO:0003677
Pte9g01467 416 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
Pte9g01467 416 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01467 Pte-Chr9 35853075 35857032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01467 1 397 B3 DNA Binding Superfamily AT3G18990 54.000 6.77e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte9g01467 B3 7.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01467 - - qsa:O6P43_011659 552.362