Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01419 ATGGAAGACCAAGAAGAATCTCTGTTTTCTGCTTCAGATCCCAGTGATTCCAGTGACGATGATGGTGATGAACTCCAAGACGACGAACCAACTTCTGAAGCTGAGTCAGCGTCTCCACCGTCCCATGAAGTTCAGAAATCGAAGAATGTCGATGCTCTTGTCAGAGGCAACCTTGTAGTGAAGAGGCAATCATTGCTTCCACGAGTTCTTTCTGTTTCAGAAGGAGCAGCGGTTTGTAGGAAACCATTTAAACCGCCATCTTCGAATTGTTATGATTATGGGAATCAGGAGCTTGCTCGGCGTCTTTGGGCTCGCAAGAGATTTGTTCCATGGGGTTCTAACAGACCAGCATTGGTTGCAATTACCAACCACATAATGGCGCCTACAAATTTTGTGAAGGATGCGGAGGAGGAGAAAGTGACTCTCCCACCTGGAGTTGAACCTTTGGTGTTATGGCTACCTGATGAATGTGAAGACGGGAATTCTGATCTGAAACCAATTATAGTAGAACCATTGCTAGTTCGCTTTCTACGACCCCACCAAAGAGAAGGGGTTCAGTTCATGTTTGAATGTGTCTCAGGGTTAAGTACTGCGTCTAATATATTTGGATGCATTCTAGCAGATGATATGGGTTTGGGGAAGACTCTGCAATCAATCACATTACTCTATACCCTTCTCTGTCAAGGGTTTGACGGGAAGCCAATGGTTAAAAAGGCAATCATCGTTACTCCCACAAGCCTTGTGAGTAATTGGGAAGCTGAAATCAAGAAATGGGTAGGTGAAAGGGTGCAACTTATTGCTTTATGTGAAAGCACTAGAGATGACGTAGTCTCTGGGATTGACAAGTTTACATGTCTCCACAGCTCTTCTCAGGTACTAATAGTTTCATACGAGACTTTCCGGATGCATTCATCAAAATTTAGCCACAGTGATTCTTGTGACCTTCTCATATGCGATGAAGCTCACAGACTGAAAAATGACCAGACCATAACAAACAGGGCATTGGCTGCTCTTGCATGTAAACGTCGAATCTTGTTGTCAGGAACTCCTATGCAAAATGACCTTGAAGAGTTCTTTGCAATGGTTAATTTTACTAATCCAGGAATTTTAGGTGATGCAGCACATTTTCGACGCTATTATGAGACACCGATTATTTGCGGAAGAGAACCAACTGCAAGTATGGAAGAGAAGATACTAGGTGATGAACGCTCTGCAGAGTTGAGTGCCAAAGTTAACCAGTTCATATTGAGAAGAACTAATGCACTTCTGTCAAATCACTTGCCACCAAAGATTGTTGAAGTTGTTTGTTGCAGACTATCCCCCCTGCAAGCAGACCTGTACAACCATTTTCTACAATCCAAAAATGTAAAACGGGCAATTGTTGAAGAAGTGAGGCAGTCAAAGATATTGGCTTACATAACAGCCCTCAAGAAATTGTGTAATCATCCAAAGCTTATCTATGACACCATACGGAGTGGGAGCCCAGGAACTTCAGGGTTTGAAGATTGTGTTCGTTTCTTTCCACCCATGATGTTTTCTGGAAGATCTGGCTCATGGACTGGAGGTGATGGAGCTTGGGTTGAACTCTCTGGAAAAATGCACGTCTTAGCACGGTTACTTGCACATTTGCGGCAGAGGACAGATGATCGGATTGTCCTTGTTTCAAACTATACTCAGACACTAGACCTGTTTGCTCAACTATGTCGTGAGAGAAGATATCCTTATTTGAGGCTTGACGGAACCACATCAATCAGCAAAAGGCAGAAGTTAGTTAACCGCTTCAATGACCCCTCTGTGGATGAATTTGCATTTCTATTAAGCAGCAAGGCAGGTGGATGTGGCCTCAATTTGATAGGTGGAAATCGTCTGGTCCTTTTTGACCCTGATTGGAATCCTGCAAATGATAAACAGGCTGCTGCAAGAGTGTGGAGAGATGGACAAAAGAAAAGAGTTTATATCTATAGGTTTCTTAGTACGGGCACAATCGAAGAGAAGGTATACCAGCGCCAGATGTCAAAAGAAGGTCTCCAAAAAGTCATACAGCAGGAACAAAAAGATAGTTCAACAGCACAGGGTAATCTTCTTTCAACAGAAGAACTCCGTGATCTTTTCACTTTTCACGAGAACGCAAGGTCGGAGATTCATGACAAGATGAAATGTATTCGCTGCCAAACTCATGACGATGAGAGTGAGAGCATAGATGGAGCTCAATCTATAATTGATGAAGAACATGATAAAGAAATCCCTGATATAGGTGGATTTGCAGAAATTTCAGGCTGCTTACATGACCTGAAGAGATCAGAAAAGCAGATAGGGACTCCCTTGGAAGAAGATTTAGCTAGTTGGGGCCATCATTTTTCCCCAACATCTGTACCTGACGCGATTCTTCAGGCGTCAGCTGGTGGTGAGGTTACTTTTGTTTTTACCAACCAGGTGGATGGGAAGCTCGCACCTATTGATTCAAAACCTAGTCCCAAGCCGCGGGAAGATGAAGCAAATAAGGAATTCTTCAAAACAAAGCAGAATCTCAAAGAACGCACTCGATTTTCCTCCCATAAGAAACAACCTTTAAACAATTCTAGTGGATTTTCTATCAAAAGAAAATCAAACCCGCTTTCTCAAACTTCAAAAATAGCCACGAGTTCAGTAAGAACTCCCCTAAGAAGTCCATTACCTGGTTTGCACAATAGCCTCTCTCTAGCAAATAGTTTGCCCCAGAAAAGAGTGTGTCCTAATCAAGGTGATGATGATGATTTTCAGTAA 2763 0.4278 MEDQEESLFSASDPSDSSDDDGDELQDDEPTSEAESASPPSHEVQKSKNVDALVRGNLVVKRQSLLPRVLSVSEGAAVCRKPFKPPSSNCYDYGNQELARRLWARKRFVPWGSNRPALVAITNHIMAPTNFVKDAEEEKVTLPPGVEPLVLWLPDECEDGNSDLKPIIVEPLLVRFLRPHQREGVQFMFECVSGLSTASNIFGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGERVQLIALCESTRDDVVSGIDKFTCLHSSSQVLIVSYETFRMHSSKFSHSDSCDLLICDEAHRLKNDQTITNRALAALACKRRILLSGTPMQNDLEEFFAMVNFTNPGILGDAAHFRRYYETPIICGREPTASMEEKILGDERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCRLSPLQADLYNHFLQSKNVKRAIVEEVRQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCVRFFPPMMFSGRSGSWTGGDGAWVELSGKMHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGTTSISKRQKLVNRFNDPSVDEFAFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQKDSSTAQGNLLSTEELRDLFTFHENARSEIHDKMKCIRCQTHDDESESIDGAQSIIDEEHDKEIPDIGGFAEISGCLHDLKRSEKQIGTPLEEDLASWGHHFSPTSVPDAILQASAGGEVTFVFTNQVDGKLAPIDSKPSPKPREDEANKEFFKTKQNLKERTRFSSHKKQPLNNSSGFSIKRKSNPLSQTSKIATSSVRTPLRSPLPGLHNSLSLANSLPQKRVCPNQGDDDDFQ* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01419 920 Gene3D - 440 709 - -
Pte9g01419 920 SMART helicmild6 562 646 IPR001650 -
Pte9g01419 920 SMART ultradead3 173 380 IPR014001 -
Pte9g01419 920 Pfam Helicase conserved C-terminal domain 537 645 IPR001650 -
Pte9g01419 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 418 IPR027417 -
Pte9g01419 920 Gene3D - 155 417 IPR038718 -
Pte9g01419 920 FunFam DNA repair and recombination protein RAD54-like 524 694 - -
Pte9g01419 920 MobiDBLite consensus disorder prediction 16 31 - -
Pte9g01419 920 FunFam DNA repair and recombination protein RAD54 148 417 - -
Pte9g01419 920 MobiDBLite consensus disorder prediction 815 920 - -
Pte9g01419 920 MobiDBLite consensus disorder prediction 853 887 - -
Pte9g01419 920 FunFam Predicted protein 440 514 - -
Pte9g01419 920 Pfam SNF2-related domain 180 486 IPR000330 GO:0005524|GO:0140658
Pte9g01419 920 MobiDBLite consensus disorder prediction 1 50 - -
Pte9g01419 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 695 IPR001650 -
Pte9g01419 920 PANTHER SNF2/RAD54 FAMILY MEMBER 48 837 - -
Pte9g01419 920 MobiDBLite consensus disorder prediction 895 909 - -
Pte9g01419 920 CDD SF2_C_SNF 529 657 - -
Pte9g01419 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 422 804 IPR027417 -
Pte9g01419 920 CDD DEXHc_RAD54 177 418 - -
Pte9g01419 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 368 IPR014001 -
Pte9g01419 920 Gene3D - 418 729 IPR027417 -
Pte9g01419 920 MobiDBLite consensus disorder prediction 822 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01419 Pte-Chr9 35323299 35331032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01419 155 704 RAD5 or RAD16-like Gene Family AT1G02670 24.615 1.81e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte9g01419 SNF2_N 2.6e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01419 K10875 - cave:132179068 1375.15