Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01409 ATGATGGATACACCAAGTAAAACTATATCAGTAGCAGCTTCAGAATCCTCAGCACAGAAGGGAACTCATATGGCTGAATCAAACATGAATTCACAACCAACCAGCACATCAGATGGGCCTATAGCTATTTTTTGGGACATTGAGAACTGTCCTGTTCCAAGTGATGTTCGCCCTGAAGATGTCGCGGGTAATATAAGAATGGCTTTGCGAGTACACCCCATAATTAGAGGAGTTGTTATTGCATTTTCTGCTTATGGAGATTTTAATGCCTTTCCTAGGCGGGTCAGGGAAGGTTGTCAGAGAACTGGGGTTAAGCTCATTGATGTTCCCAATGGGAGAAAGGATGCTGCTGACAAGGCTATCTTGGTTGACTTGTTTCTTTTTGCGCTTGACAATCCTCCACCCTCATCTATCATACTGATCTCTGGGGATGTGGATTTTGCCCCCGCACTTCATATTCTTGGACAGCGTGGCTATACTGTAGTTCTCGTCATCCCTGCTGGTTTTGTTTCATCTGCCCTGAGCAGTGCTGGTAAGTTTGTTTGGGACTGGCCTAGTGTTGCTCGTGGGGAAGGTTTTGTGCCGCCCTCAAAGCATTTGGGACCAAGTCGAGGTGGTCTAAGTGATATTCCTGGACATCTGTTAGGATGTAATATAAATGACAATATAGATGGCCAAAATGAAGAAGAAGCTATAGTTTATAGGGGTATCTCACAAAGCTACTCCAACTCCAGAGATTTCTATGTAGCATCACAGTCATTATCTCAATATAACTGCAATGCATCAAATTTATCTTGTTTGAGGTCACATAGCCTACCTTGTGGTCTGAACGAGGTTACTGCAGGCGCCATTTCTTCAGTTGGCCAAAGTGAATATCCACTATGGGTTCAGCCTGGGGACCTGAACGGTTTGAAGAACCAGCTGGTAAAATTGCTTGAACTTTCTGGTGGATGTTTGCCTTTGACTCGAGTTCCAGCTGAGTACCAGAAAATTTATGGGAGGCCCCTTTATATTTCTGAGTATGGTGCATTCAAGCTTGTGCATCTTTTCAAGAAGATGGGTGATGCAATGTCTGTAGATGGGAAAGGACATAGGAAGTTTGTATATCTGCGAAATTGGAAAGCAGGACCGAGTGCACCCCCTTTAGTTCCAGTTCAGAATAATAAAAATGGAAGAGGAGATCAGGAAGAGTGTGTTCATGTTGCTGCAGGTGGTTGCTCCTCTGATGAGTTCTCAGATGAGGAGCGAGTAGTTGAAGAACACGATGATACAAGTATTGTTGAAAAGCTTCATAATGGGGGAGCAGCTGGAGGTGAAAATGGAGAACGTGGACTTGACCAGTTCAAGTTTGAGCTGCAGGAGATTTTAGTTTGCTACTCTTGTCGGATATTCGTTGGATGCTTTGAGGCAATATATCAGCAACGATACAAGAAGCCGCTGGACTTGAGAAAATTTGGGGTTAATGATCTTGAGGATCTCTTTGGAAAAGTGAGAGATGTTGTGATGCTGCATGAAGATCCAGTAACCAAGAGGAAGTTCCTGGCTGCTGTTGGGGGCTAG 1560 0.4417 MMDTPSKTISVAASESSAQKGTHMAESNMNSQPTSTSDGPIAIFWDIENCPVPSDVRPEDVAGNIRMALRVHPIIRGVVIAFSAYGDFNAFPRRVREGCQRTGVKLIDVPNGRKDAADKAILVDLFLFALDNPPPSSIILISGDVDFAPALHILGQRGYTVVLVIPAGFVSSALSSAGKFVWDWPSVARGEGFVPPSKHLGPSRGGLSDIPGHLLGCNINDNIDGQNEEEAIVYRGISQSYSNSRDFYVASQSLSQYNCNASNLSCLRSHSLPCGLNEVTAGAISSVGQSEYPLWVQPGDLNGLKNQLVKLLELSGGCLPLTRVPAEYQKIYGRPLYISEYGAFKLVHLFKKMGDAMSVDGKGHRKFVYLRNWKAGPSAPPLVPVQNNKNGRGDQEECVHVAAGGCSSDEFSDEERVVEEHDDTSIVEKLHNGGAAGGENGERGLDQFKFELQEILVCYSCRIFVGCFEAIYQQRYKKPLDLRKFGVNDLEDLFGKVRDVVMLHEDPVTKRKFLAAVGG* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01409 519 MobiDBLite consensus disorder prediction 1 37 - -
Pte9g01409 519 CDD PIN_limkain_b1_N_like 40 166 - -
Pte9g01409 519 CDD LOTUS 301 370 - -
Pte9g01409 519 PANTHER LIMKAIN B LKAP 20 278 IPR024768 GO:0005777|GO:0010468
Pte9g01409 519 Gene3D - 300 369 IPR041966 -
Pte9g01409 519 Gene3D - 439 511 IPR041966 -
Pte9g01409 519 ProSiteProfiles OST-type HTH domain profile. 444 518 IPR025605 -
Pte9g01409 519 ProSiteProfiles OST-type HTH domain profile. 300 372 IPR025605 -
Pte9g01409 519 Gene3D - 34 185 - -
Pte9g01409 519 Pfam NYN domain 40 180 IPR021139 GO:0004540
Pte9g01409 519 CDD LOTUS 445 507 - -
Pte9g01409 519 Pfam OST-HTH/LOTUS domain 302 368 IPR025605 -
Pte9g01409 519 Pfam OST-HTH/LOTUS domain 448 507 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01409 Pte-Chr9 35283521 35286202 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01409 41 190 C2H2 Transcription Factor Family AT5G61190 42.667 4.98e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01409 - - qsa:O6P43_011725 781.556