Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01402 ATGGAGATCGCTCAGGCGGCGCCACCGCCTTCATTCGAGGATGACCCTAACGGCGATAACTTCATAGCTTCTACTTCTTCATCGTCTTCGTCGGCTCAGAATCCGAGGGAGAAGGAGAACGAATTGAAGGCATCAGCTTCGTTGGCCAAGTACGACGACGAAGATGAGGATGATGAGGATGTGTGCCGAATATGCCGTAATCCCGGCGACGCTGATAATCCTCTCAGGTATCCATGTGCTTGTAGCGGAAGCATTAAGTTTGTGCATCAGGATTGTCTTCTTCAGTGGCTTAATCACAGCAATGCCAGACAGTGCGAGGTTTGCAAACATGCATTTTCCTTTTCTCCTGTTTATGCTGAAAATGCTCCTGCAAGGTTACCGTTTCAGGAGTTTGTTGTTGGGATGGCCATGAAAGCATGCCATGTCCTGCAATTCTTTCTGCGCCTTAGTTTTGTCCTTTCTGTGTGGCTTCTGATAATACCTTTCATCACATTTTGGATATGGAGATTAGCTTTTGTGAGGAGTTTTGGTGAAGCGCACAGATTATTTCTAAGTCACTTGTCAACGACGGTGATTTTAACTGATTGTCTGCATGGTTTCCTCCTTTCGGCAAGCATTGTGTTCATCTTTCTCGGAGCCACCTCTTTGAGGGATTATTTTAGGCATTTAAGGGAGCTTGGGGGACAAGATGTAGAAAGAGAAGATGAAATGGAGAGAAATGGTGCCCGTGTTGCTAGAAGGTTGCCTGGACAAGCTAATAGGAATGCTGCTGGCGATGCAAATGCTGAAGATGTTGGTGGTGCTCAAGGAAATCCTGGTATCCAAGGTCAAATGATGAGAAGGCATGCTGATAATTTTGGTGCTCGTTGGGAGTTGCAAGCGGCAAGACTTGAGGCTCATGTTGAGCAGATGTTTGATGGCCTGGATGATGCTGATGGTGCAGAGGATGTACCTTTCGATGAACTCGTTGGCATGCAGGGACCTGTGTTTCATCTCGTTGAAAATGCATTTACAGTATTGGCCAGCAATATGATATTCCTTGGGGTTGTTGTGTTTGTGCCCTTTTCATTGGGCAGAGTAGTACTTCATTATATGTGGTGGCTCTTCTCAACTGGTCCTGTGATATCAACATTCATACCACTTACAGACACCGCATTCTCCCTGGCAAACATTACACTGAAAAATGCATTAACTGCTGTTGCAAACCTATCATCTGAAGGCCATGATGGCAGTCTGATTGGTGAGGCAGCTGAAAATTTGAAACTCAATGCAAGTGGAGTGGGCCAAATAGTGAATAATTTAAGTGCACCTCTTTCGACTGACCTTTTGAAAGGAGTATCTATTGGGAGTTCAAGGCTTTCAGATGTTGCTACTCTTGCAGTTGGGTACATGTTTATTATTGCTCTAATTCTGTGCTATCTCGGTGTGGTTGCTTTAATCCGTTATACAAAGGGTGAGCCATTAACTGTTGGAAGATTCTATGGCATCTCATCTGTAATAGAGGCAATTCCATCTCTCCTCAGGCAGTTTCTGGCTGCAATGAGACATTTAATGACAATGGTGAAGGTGGCTTTCCTCCTTGTCATTGAACTTGGCGTATTTCCTCTGATGTGTGGATGGTGGCTTGACGTATGTACAATAAAGATGTTTGGGAAGACAATGACTCACAGAGTTCAGTTCTTCTCTGCTTCTCCTTTAGCCAGTTCACTGGTTCATTGGGTCGTCGGAATTGTTTACATGCTTCAAATAAGTATATTTGTCAGCCTTCTACGAGGGGTCTTGCGCAATGGTGTTTTGTACTTCCTCCGTGATCCAGCTGATCCAAATTACAATCCTTTCCGTGATTTAATTGATGATCCTGTGCACAAGCATGCTCGAAGAGTTCTGTTGTCTGTTGCAGTCTATGGTAGTTTAATAGTGATGTTGGTCTTTTTACCGGTGAAACTGGCTATGAGAATGGCACCATCCATTTTCCCCCTTGACATATCGGTCTCTGATCCGTTCACTGAGATTCCAGCTGACATGCTTCTCTTTCAGATCTGCATTCCCTTTGCTATTGAGCATTTTAAATTGCGGACAACAATCAAATCCTTTCTGCGATATTGGTTCGTTGCAGTGGGTTGGGTACTCGGTTTAACAGACTTCTTACTGCCAAAACCTGAGGAAAATGGCAATCAAGAAAATTTCAATGGGGACCAAGCCAGGCTGGAGAGGATTCAGGCTGCACACCCTAGGGGAGAGGATCAAGCTATGGCAGCAGTTGTGGGAGCTCATGATCCTTACAGAGGAGCTCTTGTGATTGGAGATTTAAATGCCTCTGAGGAATACGGTAATGATGAACAATCTGATTCTGACAGTTATGGATTTGCTTTCCGGATTGTTCTGTTGCTGCTCGTGGCATGGCTGACTCTCCTTGTCCTCAACTCTGCCTTGATAGTTGTACCAATATCACTTGGTCGGGCTCTTTTTAACGTCGTTCCTCTTCTTCCTATAACTCATGGCATAAAATGCAACGATCTGTATGCTTTTATCATTGGAAGCTATGTGATTTGGATGGCAATTGCTGGGACTAGGTATTCTGCTGAGCAGTTTAGAAGAAAGAGAGCATCAGTTTTATTTAACCAAATATGGAAATGGTGTTGCATTGTCATGAAGAGTTCCGCACTCCTATCTTTATGGATATTTGTCATCCCAGTGCTGATTGGACTGCTTTTTGAGCTTTTGGTGATTGTCCCAATGAGGGTTCCCGTTGACGAAAGCCCAGTTTTTCTCCTCTATCAGGATTGGGCATTAGGCCTCATCTTTCTCAAGATCTGGACTAGATTGGTAATGTTGGATCACATGATGCCACTCGTTGATGAAAGTTGGCGTGCTAAATTTGAAAGAGTAAGAGAAGATGGTTTCTCTAGGCTTCAGGGCCTATGGGTCCTTAAGGAGATTGTGGTCCCAATCATAACGAAGTTATTGACGGCACTGTGCGTGCCTTATGTTTTAGCCAAAGGCGTCTTTCCTGTGCTTGGGTATCCGTTGGTAGTTAATTCTGCAGTTTACCGATTTGCCTGGTTGGGATGCCTCAGCGTGAGCTTTCTATGCTTTTGTGCCAAGAGATTCCATCGCTGGTTCACAAATCTTCACAATTCAATTCGAGATGATCGCTATCTGATTGGGAGGAGACTTCATAACTTTGGTGAAGACACTGAAACGAAGACAAATGAAACTGAGATGCTGGAAGACACGCAAAGTCCAGATACATCACCCAACGGTCCGGTTGTACACAATCATGAATTAGAAGTTGGATTGCGTCACAGGCGTGCTCATATAGTTGGTTGA 3330 0.4438 MEIAQAAPPPSFEDDPNGDNFIASTSSSSSSAQNPREKENELKASASLAKYDDEDEDDEDVCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHAFSFSPVYAENAPARLPFQEFVVGMAMKACHVLQFFLRLSFVLSVWLLIIPFITFWIWRLAFVRSFGEAHRLFLSHLSTTVILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQDVEREDEMERNGARVARRLPGQANRNAAGDANAEDVGGAQGNPGIQGQMMRRHADNFGARWELQAARLEAHVEQMFDGLDDADGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVVVFVPFSLGRVVLHYMWWLFSTGPVISTFIPLTDTAFSLANITLKNALTAVANLSSEGHDGSLIGEAAENLKLNASGVGQIVNNLSAPLSTDLLKGVSIGSSRLSDVATLAVGYMFIIALILCYLGVVALIRYTKGEPLTVGRFYGISSVIEAIPSLLRQFLAAMRHLMTMVKVAFLLVIELGVFPLMCGWWLDVCTIKMFGKTMTHRVQFFSASPLASSLVHWVVGIVYMLQISIFVSLLRGVLRNGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSVAVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAIEHFKLRTTIKSFLRYWFVAVGWVLGLTDFLLPKPEENGNQENFNGDQARLERIQAAHPRGEDQAMAAVVGAHDPYRGALVIGDLNASEEYGNDEQSDSDSYGFAFRIVLLLLVAWLTLLVLNSALIVVPISLGRALFNVVPLLPITHGIKCNDLYAFIIGSYVIWMAIAGTRYSAEQFRRKRASVLFNQIWKWCCIVMKSSALLSLWIFVIPVLIGLLFELLVIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHMMPLVDESWRAKFERVREDGFSRLQGLWVLKEIVVPIITKLLTALCVPYVLAKGVFPVLGYPLVVNSAVYRFAWLGCLSVSFLCFCAKRFHRWFTNLHNSIRDDRYLIGRRLHNFGEDTETKTNETEMLEDTQSPDTSPNGPVVHNHELEVGLRHRRAHIVG* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01402 1109 MobiDBLite consensus disorder prediction 18 35 - -
Pte9g01402 1109 PANTHER SSM4 PROTEIN 42 1065 - -
Pte9g01402 1109 MobiDBLite consensus disorder prediction 1 52 - -
Pte9g01402 1109 FunFam Probable E3 ubiquitin ligase SUD1 47 120 - -
Pte9g01402 1109 CDD RING_CH-C4HC3_MARCH6 61 110 - -
Pte9g01402 1109 ProSiteProfiles Zinc finger RING-type profile. 62 109 IPR001841 -
Pte9g01402 1109 MobiDBLite consensus disorder prediction 253 272 - -
Pte9g01402 1109 SMART ringv_2 61 109 IPR011016 GO:0008270
Pte9g01402 1109 SUPERFAMILY RING/U-box 57 112 - -
Pte9g01402 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 120 IPR013083 -
Pte9g01402 1109 MobiDBLite consensus disorder prediction 1066 1092 - -
Pte9g01402 1109 ProSiteProfiles Zinc finger RING-CH-type profile. 54 115 IPR011016 GO:0008270
Pte9g01402 1109 MobiDBLite consensus disorder prediction 36 50 - -
Pte9g01402 1109 Pfam RING-variant domain 62 108 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01402 Pte-Chr9 35243207 35249727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01402 10 129 C3H Transcription Factor Family AT1G50440 31.818 9.25e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01402 K10661 - qsa:O6P43_011737 1793.09