Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01400 ATGGCTCAGGTTCCAGTTCAGCCTCAGAATGCGATGCCTGGCGCTAACAGCGGTCCTGCCGTACCTGTGGCTCAGGGTGTTGCTAACGCTAATCAGTTTGGGACCACATCACTTTACATTGGAGATCTCGATCAGAACGTGACGGATTCACAACTGTATGACCTGTTTAACCAAGTGGGTCAGGTGGTTTCGGTTAGGGTTTGCAGGGATATGACAACCCGGAGGTCACTCGGGTATGGGTATGTCAATTATAGCAACCCTCAAGATGCTGCCAGGGCAATTGATATCCTGAACTTTACTCCACTCAATACGAAGACCATTCGAATAATGTATTCTCATCGTGACCCTAGCATTCGCAAAAGTGGTCAAGGGAATATATTTATTAAGAATTTGGACAAGGGAATCGACCATAAAGCACTGCATGACACATTCTCTGCATTTGGGAACATACTCTCTTGCAAGGTAGCTACAGATTCTTCGGGCCAATCAAAGGGTTATGGTTTTGTACAATTTGAGAGTGAGGAATCTGCTCAAAAAGCTATTGAACAGTTAAATGGCATGCTGTTGAATGACAAACAAGTGTATGTAGGCCCGTTTCTACGCAAGCAAGACAGAGAAGGTTCTTTAGACCGGACAAAATTCAATAATGTCTATGTTAAGGATCTGTCTGAATCAACAACTGATGAAGACTTGAAGAAAGTTTTTGGGGAATATGGAACCATTACTAGTGCTGTTGTGATGAGGGATGCAGATGGGAAATCAAAGTGTTTTGGATTTGTTAACTTTGAGAATCCTGAAGATGCTGCTAGGTCTGTTGAGGGTCTGAATGGGAAACAGTTTGATGGTAAAGAATGGTATGTTGGGAAAGCCCAGAAGAAGTCTGAACGGGAAATGGAACTAAAGCTTCGATTTGAGCAGAGTATGAAAGAGGCTGCTGACAAATACCAAGGAGCTAATTTATACATAAAGAACTTAGATGACAGCATTGGTGATGATAAACTTAAGGAGCTGTTTGCACCTTTTGGAACTATTACTTCATGCAAGGTCATGCGAGATCCAAATGGAATAAGCAGGGGGTCAGGATTCGTGGCATTCTCAACTCCTGAGGAGGCTTCTAGAGCACTTTCGGAGATGAATGGGAAAATGATTGTGAGTAAACCCCTTTATGTTGCTCTTGCACAAAGGAAAGAAGATAGAAGAGCAAGGTTGCAGGCGCAATTTGCTCAAATGAGGCCTGTTGCAATAGCACCATCTGTCGGACCTCGGGTGCCCATGTATCCTCCTGGTGCTCCGGGTATTGGACAACAAATATTTTATGGTCAGGCTCCACCTGCTATGATTCCTTCACAGCCAGGATTTGGATACCAGCAACAGCTTGTCCCAGGTATGAGGCCTGGTGGGGCTCCAATGCCAAACTTCTTTATGCCAATGGTTCAGCAGGGGCAGCAAGGACAACGACCTGGAGGCAGGCGTGGAGGGGCTATTCAACAGGCCCAGCAGCCTGTTCCCCTGATGCAGCAGCAGGTTAGTGTTATATATCAGTCTCTATTCTTATCAAAAGACTGA 1566 0.4502 MAQVPVQPQNAMPGANSGPAVPVAQGVANANQFGTTSLYIGDLDQNVTDSQLYDLFNQVGQVVSVRVCRDMTTRRSLGYGYVNYSNPQDAARAIDILNFTPLNTKTIRIMYSHRDPSIRKSGQGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFESEESAQKAIEQLNGMLLNDKQVYVGPFLRKQDREGSLDRTKFNNVYVKDLSESTTDEDLKKVFGEYGTITSAVVMRDADGKSKCFGFVNFENPEDAARSVEGLNGKQFDGKEWYVGKAQKKSEREMELKLRFEQSMKEAADKYQGANLYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALSEMNGKMIVSKPLYVALAQRKEDRRARLQAQFAQMRPVAIAPSVGPRVPMYPPGAPGIGQQIFYGQAPPAMIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRGGAIQQAQQPVPLMQQQVSVIYQSLFLSKD* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01400 521 Gene3D - 301 404 IPR012677 -
Pte9g01400 521 SMART rrm1_1 125 197 IPR000504 GO:0003723
Pte9g01400 521 SMART rrm1_1 216 288 IPR000504 GO:0003723
Pte9g01400 521 SMART rrm1_1 319 391 IPR000504 GO:0003723
Pte9g01400 521 SMART rrm1_1 37 110 IPR000504 GO:0003723
Pte9g01400 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 36 114 IPR000504 GO:0003723
Pte9g01400 521 FunFam Polyadenylate-binding protein 23 121 - -
Pte9g01400 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Pte9g01400 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 285 IPR000504 GO:0003723
Pte9g01400 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 194 IPR000504 GO:0003723
Pte9g01400 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 108 IPR000504 GO:0003723
Pte9g01400 521 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 388 IPR000504 GO:0003723
Pte9g01400 521 SMART rrm2_1 319 391 IPR003954 GO:0003676
Pte9g01400 521 SMART rrm2_1 125 197 IPR003954 GO:0003676
Pte9g01400 521 SMART rrm2_1 216 288 IPR003954 GO:0003676
Pte9g01400 521 SMART rrm2_1 37 110 IPR003954 GO:0003676
Pte9g01400 521 CDD RRM3_I_PABPs 214 293 - -
Pte9g01400 521 Gene3D - 126 197 IPR012677 -
Pte9g01400 521 Gene3D - 201 300 IPR012677 -
Pte9g01400 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 196 IPR000504 GO:0003723
Pte9g01400 521 FunFam Polyadenylate-binding protein 301 406 - -
Pte9g01400 521 PANTHER RNA BINDING PROTEIN 35 98 - -
Pte9g01400 521 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723
Pte9g01400 521 Gene3D - 25 125 IPR012677 -
Pte9g01400 521 SUPERFAMILY RNA-binding domain, RBD 215 399 IPR035979 GO:0003676
Pte9g01400 521 CDD RRM4_I_PABPs 317 395 - -
Pte9g01400 521 FunFam Polyadenylate-binding protein 122 205 - -
Pte9g01400 521 MobiDBLite consensus disorder prediction 480 500 - -
Pte9g01400 521 CDD RRM2_I_PABPs 122 198 IPR045305 -
Pte9g01400 521 CDD RRM1_I_PABPs 37 116 IPR034364 -
Pte9g01400 521 FunFam Polyadenylate-binding protein 206 300 - -
Pte9g01400 521 SUPERFAMILY RNA-binding domain, RBD 36 204 IPR035979 GO:0003676
Pte9g01400 521 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 37 495 IPR006515 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01400 Pte-Chr9 35238547 35241638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01400 1 478 Eukaryotic Initiation Factors Gene Family AT4G34110 74.268 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01400 K13126 - mnt:21410112 850.892