Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01353 ATGGCTTTGCAGACTTTGAATTCACCAACTGCGCCAGCTCCTTTCAATATATATGGAGATGAAGAAGATGTGGAGCTCCATGCACTTGAGTCATGGGCTAAAAGAAAGCGCACGAGACGACCGCTTATTGAAAACCCACCTACAGAGGAAGAGTACTTGGCTCTTTGTCTCATCATGCTTGCTCAAAGTGGCAGCAACAACAGTAGCAACAACAAGAGCTCTGTCGTCCAGTTCCGTGAAGTACAGGAACCGCCGTCGCGGCCCCCTTTGAGATTGTCTTACAAGTGTAGTGTATGCAGCAAGGCCTTCCCGTCGTATCAAGCACTTGGCGGACACAAGGCGAGTCACCGGAAGTCGTCTTCTCCATCTGAAGCTAACAACGCTTCCACTTCCACCACCACTACGAGTATTGCAGCAGTGACGACTACCTCCGCTGGAAGTGGTAGAGCGCACGAGTGTTCTATTTGTCACAAGAGTTTTCCGACGGGGCAAGCCCTTGGGGGTCACAAGAGGTGTCACTACGACGGTGGCAACAACAGCAGTATTGCTGTGACATCATCGGAAGGTGGGGTGTCTACGTCAAATTTTCATGGCCACCGTGGGTTTGACTTGAACCTGCCAGCTCCATTGCCAGAAGTACTGTGGCCAGTGATGGGCAGGGACAAGGGAAAAAATTCAAGTAAATTTTCTGAGGAACAAGAGGTGGAGAGTCCTTTACAATTTGCCAAGAAGGCTCGTCTACTGCTGAGTAAAACGTAG 759 0.5007 MALQTLNSPTAPAPFNIYGDEEDVELHALESWAKRKRTRRPLIENPPTEEEYLALCLIMLAQSGSNNSSNNKSSVVQFREVQEPPSRPPLRLSYKCSVCSKAFPSYQALGGHKASHRKSSSPSEANNASTSTTTTSIAAVTTTSAGSGRAHECSICHKSFPTGQALGGHKRCHYDGGNNSSIAVTSSEGGVSTSNFHGHRGFDLNLPAPLPEVLWPVMGRDKGKNSSKFSEEQEVESPLQFAKKARLLLSKT* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01353 252 ProSitePatterns Zinc finger C2H2 type domain signature. 153 173 IPR013087 -
Pte9g01353 252 Gene3D Classic Zinc Finger 92 173 - -
Pte9g01353 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 173 IPR013087 -
Pte9g01353 252 MobiDBLite consensus disorder prediction 68 89 - -
Pte9g01353 252 MobiDBLite consensus disorder prediction 114 136 - -
Pte9g01353 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Pte9g01353 252 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 211 IPR044653 GO:0003700
Pte9g01353 252 SMART c2h2final6 94 116 IPR013087 -
Pte9g01353 252 SMART c2h2final6 151 173 IPR013087 -
Pte9g01353 252 MobiDBLite consensus disorder prediction 110 136 - -
Pte9g01353 252 Pfam C2H2-type zinc finger 150 175 - -
Pte9g01353 252 Pfam C2H2-type zinc finger 94 118 - -
Pte9g01353 252 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Pte9g01353 252 SUPERFAMILY beta-beta-alpha zinc fingers 94 173 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01353 Pte-Chr9 34911956 34912949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01353 1 247 C2H2 Transcription Factor Family AT1G27730 43.083 6.94e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte9g01353 zf-C2H2_6 5.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01353 - - qsa:O6P43_011810 266.929