Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01339 ATGGCGAGGAAAACCATGGGACGTCAAAAGATTAAGATGGAGAAGATGAAAAAGGAGAGCAATCTCCAAGTGACTTTCTCCAAGCGCCGATCTGGGCTCTTCAAGAAAGCAAGTGAACTTTGCACTCTCTGTGGTGTGGAGGTTGCACTTGTTGTCTTCTCACCAGCTGGAAGAAAGGTTTTCTCATTTGGCCACCCAAGCGTGGAGGCCATTGCTGAACGCTGTTTTGGTCCAAACCCTACTAGACCAATTTCCGGTACCATGCAGCTTATTGAGGCTCACCGCAATTCGCACATCCGTACGCTCAATATGCAACTGACTCAACTCCAGAACGAGCTGGACGATGAGAAGAAACGTGGTGAGGAGCTGAACAAGATTATCAAAGCGAATCAGGCACAGGTCTGGTGGCAGAAACCAATCGACGAGCTTAACAAGCAGCAGCTTGAACAGGTGAAGGCGTGCATGGAAAAGCTTCAGAAGGATGTTGCTAAGCAAGCTGATAGTCTTTTGTCTGAGAACTCATCAAAGCCTCAGGTACAGTATCTCCATGGCAGCCCTTCCAATTCTGCTGCTTCACCAGCGATGATGCTTCCTTTTGAGACGAAGAATGTTGGGCTTCATGAGAACATGGCAACAACTCAGGGTTATGTATATTATGGAAGCAACTATGGATGGTGA 678 0.4749 MARKTMGRQKIKMEKMKKESNLQVTFSKRRSGLFKKASELCTLCGVEVALVVFSPAGRKVFSFGHPSVEAIAERCFGPNPTRPISGTMQLIEAHRNSHIRTLNMQLTQLQNELDDEKKRGEELNKIIKANQAQVWWQKPIDELNKQQLEQVKACMEKLQKDVAKQADSLLSENSSKPQVQYLHGSPSNSAASPAMMLPFETKNVGLHENMATTQGYVYYGSNYGW* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01339 225 ProSiteProfiles MADS-box domain profile. 6 58 IPR002100 GO:0003677|GO:0046983
Pte9g01339 225 Gene3D - 19 81 IPR036879 GO:0003677|GO:0046983
Pte9g01339 225 FunFam Agamous-like MADS-box protein AGL62 18 83 - -
Pte9g01339 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 63 IPR002100 GO:0003677|GO:0046983
Pte9g01339 225 PANTHER MADS BOX PROTEIN 8 164 - -
Pte9g01339 225 MobiDBLite consensus disorder prediction 166 193 - -
Pte9g01339 225 Coils Coil 99 126 - -
Pte9g01339 225 SUPERFAMILY SRF-like 7 91 IPR036879 GO:0003677|GO:0046983
Pte9g01339 225 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Pte9g01339 225 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Pte9g01339 225 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Pte9g01339 225 Gene3D - 86 185 - -
Pte9g01339 225 SMART madsneu2 6 66 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01339 Pte-Chr9 34803356 34804033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01339 1 191 Type I MADS-box Gene Family AT5G60440 53.368 9.82e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte9g01339 SRF-TF 5.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01339 - - jre:108992373 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01339 9 34803356 34804033 Pte9g01339 9 34803356 34804033 RCT