Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01298 ATGAAGTTCGCAGGTGGTGTAGTTTGTCTAGGTTGGATCCTGGTGCTGCTGCTACCTGCACTATGTAGCTCTCAAGACACGTACCAGTTTACACCCTCCAGAGCAGCCTTCTATGGAGATGGTTACGGAACTCCATCTGGAGCTTGTGGGTATGGAAAAGATGGAAGCAAAATCAATGATGGTTCGGTAGCTACAGTTTCTGACAGGCTGTTCAAATCTGGAGCAGGCTGTGGTGCATGCTATCAGGTGAGGTGCAAGAACGAAAAACTGTGCAGTAACGATGGAGCAATGGTTGTGGCAACCGACTCCGGCGAAGGAGATCGCACCGACTTCATTCTCAGCAAGATTGCTTACGAGAAATTGGGCAATAGTCCATATGCTTCAAAAGAACTTTTCAAGTATGGCGTGGTTGATGTGGAATACAAACGAGTTTCCTGTCCATACGTTGGCAGCAGCATCAAGATTAAGATCACTGAGCAGGCCAGATTTCCAGATTATTTATCTCTCACACTTGTATCTGTTGGTGGCAAAAACGATATCACTGCAGTTGAAGTGTTGGCGAATGATGAGAAGACGTGGATGCCAATGCGACGAGCATATGGAGCTGTTTGGGACCTTCCTAATCCACCATTTGGTAAACTCTACACGAGGTTTCAAGTAAATGGTTATAATCAATTTTTCAAGGCAGTGAACCCTGTTCCAAAAGACTGGGTGGCAGGAGCTTCCTATGACACTGGAGTCCAGTTTCAAAATTAG 756 0.459 MKFAGGVVCLGWILVLLLPALCSSQDTYQFTPSRAAFYGDGYGTPSGACGYGKDGSKINDGSVATVSDRLFKSGAGCGACYQVRCKNEKLCSNDGAMVVATDSGEGDRTDFILSKIAYEKLGNSPYASKELFKYGVVDVEYKRVSCPYVGSSIKIKITEQARFPDYLSLTLVSVGGKNDITAVEVLANDEKTWMPMRRAYGAVWDLPNPPFGKLYTRFQVNGYNQFFKAVNPVPKDWVAGASYDTGVQFQN* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01298 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Pte9g01298 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 245 IPR007117 -
Pte9g01298 251 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Pte9g01298 251 Gene3D - 20 146 IPR036908 -
Pte9g01298 251 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pte9g01298 251 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Pte9g01298 251 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Pte9g01298 251 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Pte9g01298 251 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Pte9g01298 251 Pfam Lytic transglycolase 64 141 IPR009009 -
Pte9g01298 251 Gene3D - 148 250 IPR036749 -
Pte9g01298 251 PANTHER EXPANSIN-B3 18 249 - -
Pte9g01298 251 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Pte9g01298 251 SUPERFAMILY Barwin-like endoglucanases 15 150 IPR036908 -
Pte9g01298 251 SMART dpbb_1 63 141 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01298 Pte-Chr9 34400330 34402288 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01298 1 247 Expansin Gene Family AT4G17030 48.606 2.60e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01298 - - qsa:O6P43_024411 280.026