Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01296 ATGGTCATGCGTACTACGACCACTGATTTCCATGTGAGCCGTAGCGACCAACAGATACAGACTCGTCCGGCAGCTTCTTGCTCTAATGACAACAGTGTTGTTCGTGGTGAAGTCGACTTTTTTTCTGATCGGTACAAGCTTTCTCTGACCTCCACTTCTGATGATGATCGTCGTGATGTGATCCAAACCACTGACAAGAAGGAGAGCAACTATCTTGATTATTCTGATCTGAATCATGTCAATACCGGGTTGCAGCTTGTTATAGCTAATACTGGAAGTGATCAATCAACTGTTGAAGATGGAGGCTCATCAGACACGGCCATAACAGCTGAGCTAGCTAAACTTGAACTGGAGCTGCAGCGTATAAACGTCGAAAACAAAAGGCTAAAGGAGATGCTTAGCCAAGTGAACAACAACTACAATGCCTTGGAAATGCAGCTTGTGACGTTAATGCAGCATCAGCAGCAGCTGAATCATCAACAACACGAGCTTGGCAATGAAAGGAAAGTGAAAGAGATGAATCAAGAAGGACTGCCGAGACAGATTTTATTCGATCTAGGTCCGAGTGGGACAACAGCTGATAGGGATGAACATGAGACATCTGATACTTCATCTGACGAAAGAACTCGTTCGGGTACACCTCGTACTAACCTTAGTACCGAGGTTGCGAGACACAGTAGTATAGAAAACGAGGTTGCTAGGGATGATAATCCAGATTCCGAATCACATGGTTGGGTTCCCAATAAGGTTCAGAAATTGAATCATGCTTCCAAGGCTATTGAACAACCGACTGAAGCAACAATGAGGAAAGCCCGAGTGTCTGTCCGTGCTCGATCAGAAGCTCCCATGATTAGTGATGGATGTCAATGGCGAAAGTATGGACAGAAAATGGCTAAAGGAAATCCATGCCCCCGTGCATATTACAGATGCACCATGGCCGTTGGTTGTCCAGTTCGCAAACAAGTTCAACGGTATGCGGAGGACAAGACGATTCTAATAACAACTTATGAAGGAAATCACAACCACCCCCTTCCACCTTCTGCGGTGGCCATGGCATCAACCACATCCGCAGCTGCTAATATGTTGTTGTCGGGGTCCATGTCTAGTGCTGATGGGTTACCCATGAACCCGAATTTGCTAGCAAGGGCAATACTTCCTTGCTCATCAAGTATGGCAACGATTTCAGCTTCTGCTCCATTCCCTACTGTGACGTTAGACCTGACTCAAAACTCAAATAACCCATCATCACAGTTTCAAAGAGCTACAGCCCCATTTCAGGTGCCCTTCATGGGACAACCTCAAAACTATGTATCAGGACCAACCACTGGTGCATTGCCTCACCCTTTTGTTCAGGCGCTCAACAATCAGTATAAGTTTTCCGGGCTTGACATGGGGTCTTCCCAGGCAGCTCATCAACTTGCACAACAACCGTTTCAGCAAAACCAACAGCCCCCATTGAATGACACATTGAGTGCTGCAACTGCTGCTCTTGCTGCTGATCCAAACTTCACCACAGCACTTGCAGCCGCCATCTCTTCCATCATCGGCGGTGCTCATACAAACAATACTAGTGGCAATGCCCAGAACAACAACCTCCAGCAACAGGAGCTTCAACAACAGCAGAAATAA 1629 0.4653 MVMRTTTTDFHVSRSDQQIQTRPAASCSNDNSVVRGEVDFFSDRYKLSLTSTSDDDRRDVIQTTDKKESNYLDYSDLNHVNTGLQLVIANTGSDQSTVEDGGSSDTAITAELAKLELELQRINVENKRLKEMLSQVNNNYNALEMQLVTLMQHQQQLNHQQHELGNERKVKEMNQEGLPRQILFDLGPSGTTADRDEHETSDTSSDERTRSGTPRTNLSTEVARHSSIENEVARDDNPDSESHGWVPNKVQKLNHASKAIEQPTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRYAEDKTILITTYEGNHNHPLPPSAVAMASTTSAAANMLLSGSMSSADGLPMNPNLLARAILPCSSSMATISASAPFPTVTLDLTQNSNNPSSQFQRATAPFQVPFMGQPQNYVSGPTTGALPHPFVQALNNQYKFSGLDMGSSQAAHQLAQQPFQQNQQPPLNDTLSAATAALAADPNFTTALAAAISSIIGGAHTNNTSGNAQNNNLQQQELQQQQK* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01296 542 ProSiteProfiles WRKY domain profile. 279 345 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte9g01296 542 MobiDBLite consensus disorder prediction 522 542 - -
Pte9g01296 542 SMART WRKY_cls 284 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte9g01296 542 MobiDBLite consensus disorder prediction 210 226 - -
Pte9g01296 542 MobiDBLite consensus disorder prediction 227 242 - -
Pte9g01296 542 MobiDBLite consensus disorder prediction 179 246 - -
Pte9g01296 542 SUPERFAMILY WRKY DNA-binding domain 277 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte9g01296 542 Gene3D WRKY domain 269 346 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte9g01296 542 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 94 527 IPR044810 GO:0003700
Pte9g01296 542 MobiDBLite consensus disorder prediction 191 209 - -
Pte9g01296 542 MobiDBLite consensus disorder prediction 1 28 - -
Pte9g01296 542 Pfam WRKY DNA -binding domain 286 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte9g01296 542 Coils Coil 112 153 - -
Pte9g01296 542 FunFam probable WRKY transcription factor 31 269 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01296 Pte-Chr9 34384053 34386670 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01296 34 529 WRKY Transcription Factor Family AT1G62300 52.941 6.35e-136 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte9g01296 WRKY 7.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01296 - - mesc:110604092 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01296 9 34384053 34386670 Pte9g01296 9 34384053 34386670 RCT
Pte9g01296 9 34384053 34386670 Pte2g00439 2 3408636 3411450 RCT
Pte17g01023 17 25306366 25308031 Pte9g01296 9 34384053 34386670 RCT
Pte15g00974 15 7178481 7181496 Pte9g01296 9 34384053 34386670 RCT
Pte17g00574 17 8493016 8493836 Pte9g01296 9 34384053 34386670 RCT
Pte2g00439 2 3408636 3411450 Pte9g01296 9 34384053 34386670 RCT