Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01285 ATGAGGGAGACAATAGAAGGCGTTGTTAGCTCCATTGGCACTTGTCGTACGATGGGTTTCGGAGAAAGTGGTAGTGGACTATGTTCAATGACGACGACGCCGCCAATGGCTTTGCCTTTTGTGACTTCTCATTATGCTGGTCATGATCACTACCTTAACCCAATCAACAATCTTGATGACCATAATTCAAATGCACGTAGATCCCTTCTTCTACATCCTTCGAATAATTACAACAGTCACGATAACCACAACATTAAAACCATCAGTGGTACAGGTTTAGGTTCCTACTTCATGGAGAATAACAACAACAACAACCTCAACAGCAACAGTGCTTGCTATTCTCCTGTCAAGGCCAAGATTATGGCTCATCCTCACTATCACCGTCTCTTGACCGCCTACACTAGTTGTCAAAAGGTTGGTGCACCACCTGAAGTTGTAGCAAGGTTGGAAGAAGTATCCGCATCGATGTCTGGCCAAGCCAGTACTGGGTGCTTAGGTGAAGATCCAGCTTTGGATCAGTTTATGGAAGCTTACTGTGAGATGCTGATTAAATACGAGCAAGAGCTCTCTAAGCCTTTCAAGGAGGCTATGCTTTATTTTCAAAGAATCGAGCGTCAGATCAAAGCTCTCACACTTACCTCTGACAAATCTGCATGTAATGATCTCACCGATAAGGCTGGCTCATCTGAAGATGATCATCTTGGAGCACACAACCACCTCGTAGATCCGCAGGCAGAAGACCAGGAGATTAAGGGTCAGCTGCTGCGAAAATACAGTGGATATTTGGGCAGTCTAAAGCAGGAATTCATGAAAAAGAGAAAGAAAGGGAAGCTGCCTAAAGAAGCAAGGCAACAATTATTGGAATGGTGGAGCAGACACTACAAATGGCCTTATCCATCAGAATCACAGAAGCTGGCTCTTGCAGAATCAACTGGTCTAGACCAGAAGCAAATAAACAACTGGTTCATAAATCAAAGGAAGCGACACTGGAAACCTTCAGAAGACATGCAATTTGTTGTCATGGATGCTGCACATCCACACTATTACATGGACAATGTCTGGGGCAATCCATTTCCTATGGATCTCTCTTCTGCGCTCATGTGA 1104 0.4429 MRETIEGVVSSIGTCRTMGFGESGSGLCSMTTTPPMALPFVTSHYAGHDHYLNPINNLDDHNSNARRSLLLHPSNNYNSHDNHNIKTISGTGLGSYFMENNNNNNLNSNSACYSPVKAKIMAHPHYHRLLTAYTSCQKVGAPPEVVARLEEVSASMSGQASTGCLGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLYFQRIERQIKALTLTSDKSACNDLTDKAGSSEDDHLGAHNHLVDPQAEDQEIKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYMDNVWGNPFPMDLSSALM* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01285 367 SMART ELK_2 249 270 IPR005539 GO:0003677
Pte9g01285 367 Pfam Homeobox KN domain 289 328 IPR008422 GO:0003677|GO:0006355
Pte9g01285 367 ProSiteProfiles 'Homeobox' domain profile. 269 332 IPR001356 GO:0003677
Pte9g01285 367 SMART HOX_1 271 336 IPR001356 GO:0003677
Pte9g01285 367 SUPERFAMILY Homeodomain-like 271 346 IPR009057 -
Pte9g01285 367 MobiDBLite consensus disorder prediction 225 246 - -
Pte9g01285 367 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
Pte9g01285 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 98 338 - -
Pte9g01285 367 Pfam KNOX1 domain 116 154 IPR005540 GO:0003677|GO:0005634
Pte9g01285 367 ProSitePatterns 'Homeobox' domain signature. 307 330 IPR017970 GO:0000981|GO:0006355
Pte9g01285 367 Pfam ELK domain 249 270 IPR005539 GO:0003677
Pte9g01285 367 CDD homeodomain 281 333 IPR001356 GO:0003677
Pte9g01285 367 Gene3D - 274 336 - -
Pte9g01285 367 ProSiteProfiles ELK domain profile. 249 269 IPR005539 GO:0003677
Pte9g01285 367 Pfam KNOX2 domain 165 211 IPR005541 GO:0003677|GO:0005634
Pte9g01285 367 FunFam Homeobox protein knotted-1-like 2 274 336 - -
Pte9g01285 367 MobiDBLite consensus disorder prediction 224 246 - -
Pte9g01285 367 SMART KNOX2_2 161 212 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01285 Pte-Chr9 34285169 34288529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01285 116 367 Homeobox Transcription Factor Family AT1G62360 75.000 9.18e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte9g01285 KNOX2 2.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01285 - - qsa:O6P43_031286 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01285 9 34285169 34288529 Pte9g01285 9 34285169 34288529 RCT