Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte9g01251 | ATGGAAAAGGAACCTGGTAAGCTATTCATCGGTGGGATTTCATGGGACACGAGTGAAGAACACCTGAGACAGTATTTTGAAATGTACGGAGATGTGATAGAAGCTGTGATAATGAAGGACAGGGTCACTGGTCGTGCACGTGGCTTTGGATTTATTGTTTATGCTGATCCTGCTATTGCAGATCAAGTTGTTATGGAAAACCACATAATTGATGGAAGAACTGTTGAAGCGAAGAAAGCTGTTCCAAGAGATGATCAGAACAATTTGACCAAAAGTAATGGTAGCATGCATGGGTCACCCGGTCCTACCCGTACAAAGAAGATTTTTGTGGGAGGTTTAGCATCCACTGTAACTGAGAGCGATTTTAAGAAGTATTTTGATCAGTTTGGAACAATTACTGATGTTGTAGTGATGTATGACCATAACACGCAGAGACCAAGAGGTTTTGGATTCATTACTTATGATTCAGAGGAAGCGGTAGAGAGAGTTCTATACAAAACTTTTCATGAACTCAGTGGTAAGATGGTTGAGGTAAAGCGGGCTGTCCCGAAGCAGTTAGCTCCGGGGCCAAATAAAGGTCAATTAGGGGGAGACAGCAATGGGATAAATAGAGTTTGCAACTTTCTTAATGGTTACATTCAGGATCGTAGTCCAAGTTTAGTTGGAGGAGGACATGGGATCAGAATGGATGAGGGGATTAGTTCTCTTTTGCTTGGCCGGAGTGGATATTCGTCTTTGAGTCCTAATTATGGGATAGGACTCAATTTTGAGCCAGCAGTGAACCATAGTACAAATACAAACTTTATTGCGGAACAGATTGTTGGACGGCAATTGAATTCCTTGTTTAGTGGAAGTCCAAACAGGTATAGCACAGGTTTTGGATATAGTCCTGTAAATGGAGGTAGTGATCCAGCTTTAAATCTGGGTGTTCAGAGTCTGTTGGGAAATGGGGGCCTTACAAGTGTCACTAGGTCGCCAACTTCTGAATCTTTTGTGGGATATGGAAATGATTCGAGCATAGGTACTTTTGGCGGGATCGGAACCACCTGGGGTTCCAGTCAAAATTCAGTGAAAGTAGGAGCAGTGGATTCTACCCACAGTAGTCAAGATGGTAGTTATGGCAATGGAAATATGATGAATCTGGGATTAAGAGGATATGGAAGGAAAGCTGTAGCCGTTGGGGAACGAGCCTTGTCATATGCTGCACCTGTTAGCAACTACAGAAGGGATTCTACAGATGATTTTGAACTTGGGTTATTTCATGGGAAATCTGCTTGGTGGTCATCACCACTAGAGAGGGAAAATTCTGGTTCGTTGGGTTATGGTTTTGGAAATGTGGCTTCAGATATGATGAGTAAAAAGTCCACCGGTTTGATTGGAACTTAG | 1386 | 0.4264 | MEKEPGKLFIGGISWDTSEEHLRQYFEMYGDVIEAVIMKDRVTGRARGFGFIVYADPAIADQVVMENHIIDGRTVEAKKAVPRDDQNNLTKSNGSMHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVERVLYKTFHELSGKMVEVKRAVPKQLAPGPNKGQLGGDSNGINRVCNFLNGYIQDRSPSLVGGGHGIRMDEGISSLLLGRSGYSSLSPNYGIGLNFEPAVNHSTNTNFIAEQIVGRQLNSLFSGSPNRYSTGFGYSPVNGGSDPALNLGVQSLLGNGGLTSVTRSPTSESFVGYGNDSSIGTFGGIGTTWGSSQNSVKVGAVDSTHSSQDGSYGNGNMMNLGLRGYGRKAVAVGERALSYAAPVSNYRRDSTDDFELGLFHGKSAWWSSPLERENSGSLGYGFGNVASDMMSKKSTGLIGT* | 462 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte9g01251 | 461 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 3 | 457 | - | - | |
Pte9g01251 | 461 | MobiDBLite | consensus disorder prediction | 80 | 103 | - | - | |
Pte9g01251 | 461 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Pte9g01251 | 461 | Gene3D | - | 5 | 88 | IPR012677 | - | |
Pte9g01251 | 461 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Pte9g01251 | 461 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Pte9g01251 | 461 | Gene3D | - | 105 | 185 | IPR012677 | - | |
Pte9g01251 | 461 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - | |
Pte9g01251 | 461 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 101 | IPR035979 | GO:0003676 | |
Pte9g01251 | 461 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 165 | IPR000504 | GO:0003723 | |
Pte9g01251 | 461 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 74 | IPR000504 | GO:0003723 | |
Pte9g01251 | 461 | MobiDBLite | consensus disorder prediction | 86 | 100 | - | - | |
Pte9g01251 | 461 | CDD | RRM2_Hrp1p | 107 | 184 | - | - | |
Pte9g01251 | 461 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 193 | IPR035979 | GO:0003676 | |
Pte9g01251 | 461 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Pte9g01251 | 461 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte9g01251 | Pte-Chr9 | 34078840 | 34080803 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte9g01251 | 8 | 180 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 23.757 | 2.42e-07 | 51.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte9g01251 | K14411 | - | qsa:O6P43_031333 | 531.946 |