Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01251 ATGGAAAAGGAACCTGGTAAGCTATTCATCGGTGGGATTTCATGGGACACGAGTGAAGAACACCTGAGACAGTATTTTGAAATGTACGGAGATGTGATAGAAGCTGTGATAATGAAGGACAGGGTCACTGGTCGTGCACGTGGCTTTGGATTTATTGTTTATGCTGATCCTGCTATTGCAGATCAAGTTGTTATGGAAAACCACATAATTGATGGAAGAACTGTTGAAGCGAAGAAAGCTGTTCCAAGAGATGATCAGAACAATTTGACCAAAAGTAATGGTAGCATGCATGGGTCACCCGGTCCTACCCGTACAAAGAAGATTTTTGTGGGAGGTTTAGCATCCACTGTAACTGAGAGCGATTTTAAGAAGTATTTTGATCAGTTTGGAACAATTACTGATGTTGTAGTGATGTATGACCATAACACGCAGAGACCAAGAGGTTTTGGATTCATTACTTATGATTCAGAGGAAGCGGTAGAGAGAGTTCTATACAAAACTTTTCATGAACTCAGTGGTAAGATGGTTGAGGTAAAGCGGGCTGTCCCGAAGCAGTTAGCTCCGGGGCCAAATAAAGGTCAATTAGGGGGAGACAGCAATGGGATAAATAGAGTTTGCAACTTTCTTAATGGTTACATTCAGGATCGTAGTCCAAGTTTAGTTGGAGGAGGACATGGGATCAGAATGGATGAGGGGATTAGTTCTCTTTTGCTTGGCCGGAGTGGATATTCGTCTTTGAGTCCTAATTATGGGATAGGACTCAATTTTGAGCCAGCAGTGAACCATAGTACAAATACAAACTTTATTGCGGAACAGATTGTTGGACGGCAATTGAATTCCTTGTTTAGTGGAAGTCCAAACAGGTATAGCACAGGTTTTGGATATAGTCCTGTAAATGGAGGTAGTGATCCAGCTTTAAATCTGGGTGTTCAGAGTCTGTTGGGAAATGGGGGCCTTACAAGTGTCACTAGGTCGCCAACTTCTGAATCTTTTGTGGGATATGGAAATGATTCGAGCATAGGTACTTTTGGCGGGATCGGAACCACCTGGGGTTCCAGTCAAAATTCAGTGAAAGTAGGAGCAGTGGATTCTACCCACAGTAGTCAAGATGGTAGTTATGGCAATGGAAATATGATGAATCTGGGATTAAGAGGATATGGAAGGAAAGCTGTAGCCGTTGGGGAACGAGCCTTGTCATATGCTGCACCTGTTAGCAACTACAGAAGGGATTCTACAGATGATTTTGAACTTGGGTTATTTCATGGGAAATCTGCTTGGTGGTCATCACCACTAGAGAGGGAAAATTCTGGTTCGTTGGGTTATGGTTTTGGAAATGTGGCTTCAGATATGATGAGTAAAAAGTCCACCGGTTTGATTGGAACTTAG 1386 0.4264 MEKEPGKLFIGGISWDTSEEHLRQYFEMYGDVIEAVIMKDRVTGRARGFGFIVYADPAIADQVVMENHIIDGRTVEAKKAVPRDDQNNLTKSNGSMHGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVERVLYKTFHELSGKMVEVKRAVPKQLAPGPNKGQLGGDSNGINRVCNFLNGYIQDRSPSLVGGGHGIRMDEGISSLLLGRSGYSSLSPNYGIGLNFEPAVNHSTNTNFIAEQIVGRQLNSLFSGSPNRYSTGFGYSPVNGGSDPALNLGVQSLLGNGGLTSVTRSPTSESFVGYGNDSSIGTFGGIGTTWGSSQNSVKVGAVDSTHSSQDGSYGNGNMMNLGLRGYGRKAVAVGERALSYAAPVSNYRRDSTDDFELGLFHGKSAWWSSPLERENSGSLGYGFGNVASDMMSKKSTGLIGT* 462
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01251 461 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 457 - -
Pte9g01251 461 MobiDBLite consensus disorder prediction 80 103 - -
Pte9g01251 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pte9g01251 461 Gene3D - 5 88 IPR012677 -
Pte9g01251 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte9g01251 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte9g01251 461 Gene3D - 105 185 IPR012677 -
Pte9g01251 461 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pte9g01251 461 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Pte9g01251 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Pte9g01251 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Pte9g01251 461 MobiDBLite consensus disorder prediction 86 100 - -
Pte9g01251 461 CDD RRM2_Hrp1p 107 184 - -
Pte9g01251 461 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Pte9g01251 461 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pte9g01251 461 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte9g01251 Pte-Chr9 34078840 34080803 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01251 8 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.757 2.42e-07 51.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01251 K14411 - qsa:O6P43_031333 531.946