Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01247 ATGGAAGAGTGCCTACAGAGGAGTAAGGAGGCGCGACCTTGGGGAAAGTTTGCTGCAGAGATGAGAGACTCTACTAGGCAAGGGGTTAGATTATGGCTTGGAACATTTGAAGCAGCAGCTTTGGCATATGATCAAGCTGCATTTTCGATGCACTGTTCAATGGTTGTGCTTAACTTTCCAAAGGAAATAGTGAGGGACTCACTCAGAGACATGGAATGCAAGCATTGGGACGATGGTTCCTTACTTGTATTGGCACTCAAGAGGAAGTAG 270 0.463 MEECLQRSKEARPWGKFAAEMRDSTRQGVRLWLGTFEAAALAYDQAAFSMHCSMVVLNFPKEIVRDSLRDMECKHWDDGSLLVLALKRK* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01247 89 SUPERFAMILY DNA-binding domain 11 61 IPR016177 GO:0003677
Pte9g01247 89 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Pte9g01247 89 PRINTS Ethylene responsive element binding protein signature 42 62 IPR001471 GO:0003700|GO:0006355
Pte9g01247 89 Pfam AP2 domain 12 50 IPR001471 GO:0003700|GO:0006355
Pte9g01247 89 SMART rav1_2 12 66 IPR001471 GO:0003700|GO:0006355
Pte9g01247 89 PANTHER DNA-BINDING DOMAIN 12 62 IPR044808 GO:0003700|GO:0009873
Pte9g01247 89 ProSiteProfiles AP2/ERF domain profile. 5 60 IPR001471 GO:0003700|GO:0006355
Pte9g01247 89 Gene3D AP2/ERF domain 7 62 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01247 Pte-Chr9 34048626 34048895 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01247 2 89 AP2-EREBP Transcription Factor Family AT2G31230 60.440 1.49e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte9g01247 AP2 5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01247 K14516 - gmx:100779524 119.398