Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01245 ATGAGTTATTTGGGAGTCGGTGTGAGTCCTGGGACGGTGCCAGTGTACCACAGCACAAACCTGAAAGTACTAGACAGAAGGATCAAGATAGCAGAGTTGGTGTTAAGAATTCTGATCTGTGGTCTTGGAGTTCTTGCAGCTATTCTTGTTGCAACGGATACTCAGGTTAAAGAGATCTTCACAATTCAGAAGAAAGCTAAATTCACAGACATGAAAGCTTTAGTCTTTCTGGTGATAGCCAATGGGATAGCTGCTGCTTATTCTTTGGTCCTGGGGCTGCGATGTGTTGTGAGTATGGTGAAAGGACATGTGCTCTTCAGCAAGCCCTTAGCTTGGATCATTTTCTTTGGTGATCAGGTCATGGCATATTTGACAGTGGCTGCAGTGGGAGCTGCAGCCCAATCTGCAGCGTTTGCCAAACTTGGGCAGCCAGAGCTGCAGTGGATGAAGATATGTGATATGTATGGGAAATTCTGCAACCAAGTGGGAGAAGGAGTTGCTTGTGCGCTGCTAGTTAGCCTTAGTATGGTGGTTTTGTCTTGTATATCTTCTTTTAATCTGTTTCGTTTGTATGGTGGTAACAAGAACAAGAACCTTGCCATTGCCAGATGCTCTCAAGACACGTACCAGTTTACACCCTCCAGAGCAGCCTTCTATGGAGATGGTTACGGAACTCCATCTGGAGCTTGTGGGTATGGAAAAGATGGAAGCAAAATCAATGATGGTTCTGTAGCTACAGTTTCTGGCAGGCTGTTCAAATCTGGAGCAGGCTGTGGTGCATGCTATCAGGTGAGGTGCAAGAACGAAAAACTGTGCAGTAATGATGGAGCAATGGTTGTGGCTACCGACTCCGGCGAAGGAGATCGCACCGACTTCATTCTCAGCGAGATTGCGTATGAGAAATTGGGCAATAGTCCATATGCTTCAAAAGAACTTTTCAAGTATGGCGTGGTTGATGTGGAATACAAACGAGTTTCCTGTCTATACGTTGGCAGCAGCATCAAGATTAAGATCACTGAGCAGGCCAGATTTCCAGATTATTTATCTCTCACACTTGTATCTGTTGGTGGCAAAAACGATATCACTGCAGTTGAAGTGTTGGCGAATGATGAGAAGACGTGGATGCCAATGCGACGAGCATATGGAGCTGTTTGGGACCTTCCTAATCCACCATTTGGTAAACTCTTCACGAGGTTTCAAGTAAATGGTTATAATCAATTTTTCAAGGCAGTGAACCCTGTTCCAAAAGACTGGGTGGCAGGAGCTTCCTATGACACTGGAGTCCAGTTTCAAAATTAG 1299 0.4519 MSYLGVGVSPGTVPVYHSTNLKVLDRRIKIAELVLRILICGLGVLAAILVATDTQVKEIFTIQKKAKFTDMKALVFLVIANGIAAAYSLVLGLRCVVSMVKGHVLFSKPLAWIIFFGDQVMAYLTVAAVGAAAQSAAFAKLGQPELQWMKICDMYGKFCNQVGEGVACALLVSLSMVVLSCISSFNLFRLYGGNKNKNLAIARCSQDTYQFTPSRAAFYGDGYGTPSGACGYGKDGSKINDGSVATVSGRLFKSGAGCGACYQVRCKNEKLCSNDGAMVVATDSGEGDRTDFILSEIAYEKLGNSPYASKELFKYGVVDVEYKRVSCLYVGSSIKIKITEQARFPDYLSLTLVSVGGKNDITAVEVLANDEKTWMPMRRAYGAVWDLPNPPFGKLFTRFQVNGYNQFFKAVNPVPKDWVAGASYDTGVQFQN* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01245 432 Gene3D - 329 431 IPR036749 -
Pte9g01245 432 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 227 332 IPR007112 -
Pte9g01245 432 PRINTS Expansin/Lol pI family signature 315 331 IPR007118 GO:0005576
Pte9g01245 432 PRINTS Expansin/Lol pI family signature 210 225 IPR007118 GO:0005576
Pte9g01245 432 PRINTS Expansin/Lol pI family signature 248 266 IPR007118 GO:0005576
Pte9g01245 432 PRINTS Expansin/Lol pI family signature 374 388 IPR007118 GO:0005576
Pte9g01245 432 PRINTS Expansin/Lol pI family signature 412 426 IPR007118 GO:0005576
Pte9g01245 432 SMART dpbb_1 244 322 IPR007112 -
Pte9g01245 432 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 346 426 IPR007117 -
Pte9g01245 432 Pfam Expansin C-terminal domain 334 409 IPR007117 -
Pte9g01245 432 Pfam Lytic transglycolase 245 322 IPR009009 -
Pte9g01245 432 Gene3D - 196 327 IPR036908 -
Pte9g01245 432 SUPERFAMILY PHL pollen allergen 334 425 IPR036749 -
Pte9g01245 432 NCBIfam plant integral membrane protein TIGR01569 33 186 IPR006459 -
Pte9g01245 432 PANTHER EXPANSIN-B3 185 430 - -
Pte9g01245 432 Pfam Casparian strip membrane protein domain 26 173 IPR006702 -
Pte9g01245 432 SUPERFAMILY Barwin-like endoglucanases 209 331 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01245 Pte-Chr9 34040929 34044897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01245 210 428 Expansin Gene Family AT4G17030 50.224 9.11e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01245 - - qsa:O6P43_012025 319.316