Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01237 ATGGCAAGTAGGCTGCCAAATGAACAGGTGAACTCATCAATCAATGCTAACAACTCATCAGCTGCAGATGAAAATGAATGCACAGTGAGGGAGCAAGACCGGTTCATGCCAATAGCCAACGTGATTAGGATCATGCGAAAGATCCTACCACCACATGCAAAAATCTCAGATGATGCAAAGGAAACGATCCAAGAGTGTGTGTCTGAGTACATCAGTTTCATTACTGGTGAAGCCAATGAGCGTTGCCAGCGTGAACAGCGCAAGACCATTACAGCTGAAGATGTGCTTTGGGCCATGAGCAAGCTTGGTTTTGATGACTACATCGAACCGCTCACCATGTACCTCCACCGATACCGTGAGATGGAAGGTGACCGTGGTGGATCTTTGAGAGGGGAACCACTTGGGAAAAGGACATTGGACTATGGTGCCACATTAGGTGTTGGTGTTGGTGTTGGTGTTCCTCCTCCAGGAGCAGCATTTGCACAAACAGTTTCATTGCCATTCCACATTGGCCATCATCATCATCCCAATGGGTTCTATGGATCTCATGCAGGTTCAAGTGTTCCAATGGGTGCTGGTGCGTACATGAGGGAGCCAACCAATAACAACAATGCAGGTGGCTCATCTCAAGGTCCAATGGGCAGTGCGGAACCAAATGGTCAATTCAAATGA 672 0.4777 MASRLPNEQVNSSINANNSSAADENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRGGSLRGEPLGKRTLDYGATLGVGVGVGVPPPGAAFAQTVSLPFHIGHHHHPNGFYGSHAGSSVPMGAGAYMREPTNNNNAGGSSQGPMGSAEPNGQFK* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01237 223 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
Pte9g01237 223 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Pte9g01237 223 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Pte9g01237 223 FunFam Nuclear transcription factor Y subunit B-6 24 140 - -
Pte9g01237 223 SUPERFAMILY Histone-fold 32 129 IPR009072 GO:0046982
Pte9g01237 223 Gene3D Histone, subunit A 22 135 IPR009072 GO:0046982
Pte9g01237 223 MobiDBLite consensus disorder prediction 1 27 - -
Pte9g01237 223 MobiDBLite consensus disorder prediction 192 223 - -
Pte9g01237 223 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte9g01237 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Pte9g01237 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 183 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte9g01237 223 MobiDBLite consensus disorder prediction 1 25 - -
Pte9g01237 223 MobiDBLite consensus disorder prediction 197 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01237 Pte-Chr9 34009513 34010184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01237 17 182 CCAAT-HAP3 Transcription Factor Family AT5G47670 65.698 1.06e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte9g01237 CBFD_NFYB_HMF 6.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01237 K08065 - cave:132172851 265.388