Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01236 ATGGCTGACTCGGACAACGAGTCAGGAGGTCAAACTGGAGTTCACAGTGGCAGCAGTGAATTACCAGGATCCAGAGAGCAAGATAGGTTTCTCCCCATAGCAAACGTGAGTAGGATAATGAAGAAAGCATTACCTGCAAACGCTAAGATCTCAAAGGAAGCCAAGGAGACTGTACAAGAGTGCGTGTCAGAGTTCATAAGCTTCATCACTGGGGAGGCATCAGAAAAGTGTCAGAAGGAGAAGAGAAAGACGATCAACGGAGATGACATATTGTGGGCCATGACCACACTGGGGTTTGAGGAATATGCGGAGCCTTTGAAGATTTATCTGCAGAAGTATAGGGAGATGGAAGGCGAGAGGACTACCTTGGTAGGTAGGCAACAGAGTGATCATCAGAGGGATCATAGAAATGGTGGTGATCTTGTTTATGGTGGTGGTGGTGGGCTGCAGTCCACCATGATGATGATGATGGGACATCATTCTCGTCAAGAAAATATGTGTGGATCTGGAAGTGGGGATAGAACCTCTTCTAGAAGGACCAGTACTTGCCATGTTGACAACACAAGGAAGAAGAAAAGGGGATGA 585 0.4684 MADSDNESGGQTGVHSGSSELPGSREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASEKCQKEKRKTINGDDILWAMTTLGFEEYAEPLKIYLQKYREMEGERTTLVGRQQSDHQRDHRNGGDLVYGGGGGLQSTMMMMMGHHSRQENMCGSGSGDRTSSRRTSTCHVDNTRKKKRG* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01236 194 MobiDBLite consensus disorder prediction 123 150 - -
Pte9g01236 194 SUPERFAMILY Histone-fold 27 131 IPR009072 GO:0046982
Pte9g01236 194 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte9g01236 194 Gene3D Histone, subunit A 20 140 IPR009072 GO:0046982
Pte9g01236 194 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte9g01236 194 MobiDBLite consensus disorder prediction 123 138 - -
Pte9g01236 194 FunFam Nuclear transcription factor Y subunit B-3 19 141 - -
Pte9g01236 194 MobiDBLite consensus disorder prediction 164 178 - -
Pte9g01236 194 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Pte9g01236 194 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Pte9g01236 194 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Pte9g01236 194 MobiDBLite consensus disorder prediction 162 194 - -
Pte9g01236 194 MobiDBLite consensus disorder prediction 1 23 - -
Pte9g01236 194 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Pte9g01236 194 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01236 Pte-Chr9 33999702 34001158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01236 1 160 CCAAT-HAP3 Transcription Factor Family AT4G14540 68.293 1.45e-71 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte9g01236 CBFD_NFYB_HMF 4.3e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01236 K08065 - gmx:100305641 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01236 9 33999702 34001158 Pte9g01236 9 33999702 34001158 RCT