Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01084 ATGGAGAAACATTCCGAGAATACAAGATCAGGTGCCAATGAAGGTCCATTTGATATTTCAACCATTGGTGTAACTAACAACGGGAGAAGCAGTGCATGGGGAGTACCACATGGCTCTAGAGCATTCCATGCCTCAAGTGATGCTAGCCTTTTCTCCAGCTCGCTGCCAGTCCTTCCACATGAAAAATTGAAATTTTCTGATTCTGAGGATTTGGTTCAATCCATTGATGATAACTTGCCACTTCCAAATGAGCTTCATAAAGGAGATGAGGATCATGACCAACTCCTGGAAGCAGAAATGAATGCAATTGGTAACATGCTTCCAGATGATGAAGAAGAGTTATTGGCCGGGATCATCGATGATTTTGACCTAACAAGGTTGCCGAGCCAGCTGGAGGATTTGGATGACAATGATTTATTTGGCAGTGGGGGTGGGCTAGAAATGGATTATGATCCTCAAGAAAGCCTTGGTGTTGCTTTCTCTAGGGTAAACTTATCTGATGGAGTTGCTCTAAATGGTATTGGTCACTATGCACTTCCAAATGGTGTTGCACCTATTGCCGGTGAACATCCCTATGGGGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAATAGTAATGTTGAAGACTCTGAATTAAGATCACTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGTAAGCACAGGGGCTTTGTAATGATATCTTACTATGACATCCGAGCTGCTCGAACTGCAATGCGTGCGCTACAAAACAAGCCCTTGAGAAGAAGAAAGCTTGACATCCATTTTTCCATTCCGAAGGATAATCCCTCAGAAAAGGATATCAACCAAGGCACTCTTGTGGTATTTAACTTGGACCCTTCTGTGTCAAATGATGATCTCCGTCAAATATTTGGAGCTTATGGGGAGATCAAAGAAATCAGGGAAACACCACACAAGAGGCACCATAAGTTCATAGAATTTTATGACGTCAGGGCAGCAGAGGCAGCTTTGATAGCATTAAATCGGAGCGATATAGCTGGAAAACGCATAAAGCTCGAACCAAGTCGGCCCGGTGGAGCACGTAGGAATTTAATGCACCAATTGGGTCATGAGGTGGACCATGATGAACTACGGAGTTTCAGACATCATGTGAGCTCACCTGTGGCAAACTCTCCTCCAGTGGTGACAGGTAACTGGACACATTTCGGCAGTCCGGTGGAGCATAGTCCACTACGTTCATTTAGCAAGTCCTCAGGTTTTGGTGGAGCAAGTCCAACCAATGGCAATCTTCTGCCTGGATTAGCATCAATTCTGCCTCATCATGTGTCAAACTCAGCAAAGATTTCACCTATTGGTAAAGATCTAGGAAGGATAAACCATGCAAATCAAATGTTCCCTAAACCTTTACCAACCCAAGGGACTAGTTTTCAGCATTCCAGTTCTTATCCTGATCAGAAATCACATTTTAGTACAAGATCTTTTTCCAGTTTTGTTGAACCAAGTTCTAGTTCATCAAGTATTGGAACACTTACTGGCCCCCAATTTCTTTGGGGAAGTCCAACCCCTTACTCAGAGAGATCAAGTTCATCAGCGTGGTCAACATCTTCTGGTGGAAACCTATTCACGTCAACAGGCCAAAATCAAGGTTTTCCATACCCCAGTCGTCGTTCCTCGTTTCTTGGTGCACATTCTTATAATCATGTTGGATCTGCTCCATCCGGTGTAGCTCTTGAGAGGCCTTTTAACTACCCTGAATCGCCTGACACATCTTACACAAAAACAGCTGCATTTGGGGGATTGAGCCATGATGATGGAAATTTAATGATCAGTATGGGAAGTAATCATGCTGCTCTGGGAGCTTGTGTTACACATCCAGGAAATATACGTGATAATAGTTCATCCAATTTCTCAATGTTGTCAATGCCTAGGCATGGGTCTTTGTTCCTGGGAAATGGGTTGTATTCTGGGCTTGGAGGAACGATGAATGATGGATTGATCGAGCGTGGCCGGAATCGAAGATCTGAAATCAGTGTGAACCAGATTGATGTCAAGAAACAATATCAACTTGATGTAGATAAGATCCTCAAAGGGGAAGACAGTAGGACTACTTTAATGGTTAAAAACATTCCTAATAAGTACACCTCAAAAATGTTGCTGGCTGCAATTGATGAGAATCACAGGGGTGCTTATGACTTTCTATACTTGCCAATTGATTTTAAGAACAAGTGCAATGTTGGTTATGCTTTCATCAACATGGCGTCTCCTTCACACATCATTTCCTTTTACGAGGCGTTTAATGGGAAAAAGTGGGAGAAGTTTAACAGTGAAAAAGTTGCTTCCCTGGCCTATGCTAGAATCCAGGGAAAGGCTGCCCTTGTTGCCCACTTTCAGAATTCCAGCCTAATGAACGAAGATAAACGATGCCGGCCCATTGTTTTCCATTCCGAAGGTGGAGAAAACGGTGATGAGGGACCTCTCCTTTCTAGCAATTTAAACATATGCATTCGCCAACCAGATGGATCCTATTCAGCTGACTTGTTGGACAGCCCAAAGGGTGATGATTTTGATGACAAGCCAGACAACACTTAA 2586 0.4316 MEKHSENTRSGANEGPFDISTIGVTNNGRSSAWGVPHGSRAFHASSDASLFSSSLPVLPHEKLKFSDSEDLVQSIDDNLPLPNELHKGDEDHDQLLEAEMNAIGNMLPDDEEELLAGIIDDFDLTRLPSQLEDLDDNDLFGSGGGLEMDYDPQESLGVAFSRVNLSDGVALNGIGHYALPNGVAPIAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEIKEIRETPHKRHHKFIEFYDVRAAEAALIALNRSDIAGKRIKLEPSRPGGARRNLMHQLGHEVDHDELRSFRHHVSSPVANSPPVVTGNWTHFGSPVEHSPLRSFSKSSGFGGASPTNGNLLPGLASILPHHVSNSAKISPIGKDLGRINHANQMFPKPLPTQGTSFQHSSSYPDQKSHFSTRSFSSFVEPSSSSSSIGTLTGPQFLWGSPTPYSERSSSSAWSTSSGGNLFTSTGQNQGFPYPSRRSSFLGAHSYNHVGSAPSGVALERPFNYPESPDTSYTKTAAFGGLSHDDGNLMISMGSNHAALGACVTHPGNIRDNSSSNFSMLSMPRHGSLFLGNGLYSGLGGTMNDGLIERGRNRRSEISVNQIDVKKQYQLDVDKILKGEDSRTTLMVKNIPNKYTSKMLLAAIDENHRGAYDFLYLPIDFKNKCNVGYAFINMASPSHIISFYEAFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNEDKRCRPIVFHSEGGENGDEGPLLSSNLNICIRQPDGSYSADLLDSPKGDDFDDKPDNT* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01084 861 SUPERFAMILY RNA-binding domain, RBD 195 358 IPR035979 GO:0003676
Pte9g01084 861 Pfam RNA recognition motif 2 700 796 IPR007201 -
Pte9g01084 861 MobiDBLite consensus disorder prediction 464 486 - -
Pte9g01084 861 MobiDBLite consensus disorder prediction 460 486 - -
Pte9g01084 861 SUPERFAMILY RNA-binding domain, RBD 702 787 IPR035979 GO:0003676
Pte9g01084 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 271 IPR000504 GO:0003723
Pte9g01084 861 Gene3D - 693 789 IPR012677 -
Pte9g01084 861 CDD RRM2_MEI2_like 282 352 - -
Pte9g01084 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 264 IPR000504 GO:0003723
Pte9g01084 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 285 350 IPR000504 GO:0003723
Pte9g01084 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 356 IPR000504 GO:0003723
Pte9g01084 861 FunFam Protein MEI2-like 1 282 377 - -
Pte9g01084 861 Gene3D - 282 374 IPR012677 -
Pte9g01084 861 SMART rrm1_1 199 267 IPR000504 GO:0003723
Pte9g01084 861 SMART rrm1_1 702 778 IPR000504 GO:0003723
Pte9g01084 861 SMART rrm1_1 284 352 IPR000504 GO:0003723
Pte9g01084 861 CDD RRM1_MEI2_like 197 273 IPR034453 -
Pte9g01084 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 48 814 - -
Pte9g01084 861 MobiDBLite consensus disorder prediction 840 861 - -
Pte9g01084 861 MobiDBLite consensus disorder prediction 1 23 - -
Pte9g01084 861 CDD RRM3_MEI2_like 703 788 IPR034454 -
Pte9g01084 861 FunFam MEI2-like protein 5 isoform 2 187 281 - -
Pte9g01084 861 Gene3D - 188 281 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01084 Pte-Chr9 32427506 32433659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01084 148 391 Eukaryotic Initiation Factors Gene Family AT1G71770 23.529 2.92e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01084 - - gmx:100812324 1197.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g01084 9 32427506 32433659 Pte9g01084 9 32427506 32433659 RCT