LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte9g01078	ATGGATTCGAGTTCCGACAACACCGCCGCTTCTACTACTTCCCCACCTTCTTCTGATACCAAGTGGCCGGCGAAGGAGACGAAAAGCTGGGCTGATGTAGCTGAAGAAGAAAGCTTGAGAGAGGATGAATCATCGATAAATGCTCCTCCTTCAAGTTCAAAATCGAATGAAACGCCCAACCTCGAAGGGTTAACCGTGGACGAGAATAAGAAGCCGGTCAATAAGTTCCTTGACGATCCTGAGGACTCTAACATCAAAGCTGTTACATCAGGGGATACACCTTATACATCGGCGAGTAAGTTTGAAGACTTGAAGTTGTCTGAAGATCTAATAAAGGGGTTATATGTGGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATAAGTTTGCCTATGATTTTGACTCCTCCTTATAAAGATTTGATTGCTCAAGCCCATAATGGTTCTGGAAAAACAACCTGTTTTGTGCTCGGGATGCTGAGTCGTGTTGATCCTAAGCTACAAGCCCCACAAGCACTCTGTATTTGTCCCACTAGAGAATTGGCCATTCAGAACATAGACGTTCTCCGGAAGATGGGAAAATATTCAGGAATCAGTTCAGAATGTGCCATACCAACTGATAGTAGGGATACTCTTCCAATACAGAAGAGGGCACCAATTATGGCTCAAGTAGTGATCGGCACCCCAGGAACCATAAAGAGATGGATGCAGTTCAAGAAATTGGGAGTCAGCCGTTTGAAGATCCTTGTCTTTGATGAGGCTGATCAAATGCTGGCAGAGGATGGTTTTCAAGATGATTCCTTGAGAATAATGAAAGACATCCAAAAACTCAGTCCTGAGGCTCCGGGTTGCCAGGTGCTGTTGTTCTCTGCCACGTTCAATGACACGGTGAAGAATTTTGTTTCAAGGGTTGTCAGAAAGGATCACAACCAATTATTTGTGAAGAGAGAAGAACTTTCCTTGGATGCAGTAAAACAATACAAGGTGAACTGTCCTGATGAACTCTCCAAGCTTGAGGTGGTCAAAGATTATATCTTTGAATTTGGAGAGAATGTGGGACAAACTATCATATTTGTTCGAACGAGGAATAGTGCCCAAATGTTGCACAAATCACTGACTGATATGGGTTATGAGGTCACTGCTATACAAGGGGCTCTTGATCATGAACAGAGAGATAAAATTGTCAGAGAGTTCAAAGATGGTCTCACTCAAGTACTTATTTCCACTGATGTACTTGCTCGTGGCTTTGATCAACAGCAGGTCAATTTGGTCATAAATTATGATCTTCCAGTGAAACATACCTCTGAGTTTAGTCGTGGTTTTGAACCTGATTATGAGGTGTATCTGCACAGAGTTGGCAGAGCAGGTCGCTTTGGCCGCAAGGGTGCAGTGTTTAATCTGATCTGTACTGAGAGAGATGAAAAACTAATGGCAAAGATTGAACAGCACTTTGGTGCAAGCGTCAATGAGGTCCGTGAGAAAAACGTAGAAGAATTCAAAGGTGCTCTCAAGTCTGCCGGTTTACTCTGA	1533	0.4318	MDSSSDNTAASTTSPPSSDTKWPAKETKSWADVAEEESLREDESSINAPPSSSKSNETPNLEGLTVDENKKPVNKFLDDPEDSNIKAVTSGDTPYTSASKFEDLKLSEDLIKGLYVEMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIDVLRKMGKYSGISSECAIPTDSRDTLPIQKRAPIMAQVVIGTPGTIKRWMQFKKLGVSRLKILVFDEADQMLAEDGFQDDSLRIMKDIQKLSPEAPGCQVLLFSATFNDTVKNFVSRVVRKDHNQLFVKREELSLDAVKQYKVNCPDELSKLEVVKDYIFEFGENVGQTIIFVRTRNSAQMLHKSLTDMGYEVTAIQGALDHEQRDKIVREFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTSEFSRGFEPDYEVYLHRVGRAGRFGRKGAVFNLICTERDEKLMAKIEQHFGASVNEVREKNVEEFKGALKSAGLL*	511

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte9g01078	510	Gene3D	-	322	504	IPR027417	-
	Pte9g01078	510	Pfam	Helicase conserved C-terminal domain	338	460	IPR001650	-
	Pte9g01078	510	MobiDBLite	consensus disorder prediction	25	43	-	-
	Pte9g01078	510	SMART	ultradead3	119	328	IPR014001	-
	Pte9g01078	510	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	133	312	IPR014001	-
	Pte9g01078	510	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	171	480	IPR027417	-
	Pte9g01078	510	CDD	DEADc_DDX19_DDX25	106	313	-	-
	Pte9g01078	510	MobiDBLite	consensus disorder prediction	1	24	-	-
	Pte9g01078	510	CDD	SF2_C_DEAD	325	469	-	-
	Pte9g01078	510	Gene3D	-	78	319	IPR027417	-
	Pte9g01078	510	Pfam	DEAD/DEAH box helicase	125	300	IPR011545	GO:0003676\|GO:0005524
	Pte9g01078	510	SMART	helicmild6	367	460	IPR001650	-
	Pte9g01078	510	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	341	501	IPR001650	-
	Pte9g01078	510	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	61	479	-	-
	Pte9g01078	510	MobiDBLite	consensus disorder prediction	1	92	-	-
	Pte9g01078	510	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	99	128	IPR014014	GO:0003724
	Pte9g01078	510	MobiDBLite	consensus disorder prediction	44	63	-	-
	Pte9g01078	510	MobiDBLite	consensus disorder prediction	68	82	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte9g01078	Pte-Chr9	32380163	32386366	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte9g01078	92	492	Eukaryotic Initiation Factors Gene Family	AT1G72730	37.864	2.00e-72	234

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte9g01078	K18655		-	qsa:O6P43_010208	753.436