Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01078 ATGGATTCGAGTTCCGACAACACCGCCGCTTCTACTACTTCCCCACCTTCTTCTGATACCAAGTGGCCGGCGAAGGAGACGAAAAGCTGGGCTGATGTAGCTGAAGAAGAAAGCTTGAGAGAGGATGAATCATCGATAAATGCTCCTCCTTCAAGTTCAAAATCGAATGAAACGCCCAACCTCGAAGGGTTAACCGTGGACGAGAATAAGAAGCCGGTCAATAAGTTCCTTGACGATCCTGAGGACTCTAACATCAAAGCTGTTACATCAGGGGATACACCTTATACATCGGCGAGTAAGTTTGAAGACTTGAAGTTGTCTGAAGATCTAATAAAGGGGTTATATGTGGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATAAGTTTGCCTATGATTTTGACTCCTCCTTATAAAGATTTGATTGCTCAAGCCCATAATGGTTCTGGAAAAACAACCTGTTTTGTGCTCGGGATGCTGAGTCGTGTTGATCCTAAGCTACAAGCCCCACAAGCACTCTGTATTTGTCCCACTAGAGAATTGGCCATTCAGAACATAGACGTTCTCCGGAAGATGGGAAAATATTCAGGAATCAGTTCAGAATGTGCCATACCAACTGATAGTAGGGATACTCTTCCAATACAGAAGAGGGCACCAATTATGGCTCAAGTAGTGATCGGCACCCCAGGAACCATAAAGAGATGGATGCAGTTCAAGAAATTGGGAGTCAGCCGTTTGAAGATCCTTGTCTTTGATGAGGCTGATCAAATGCTGGCAGAGGATGGTTTTCAAGATGATTCCTTGAGAATAATGAAAGACATCCAAAAACTCAGTCCTGAGGCTCCGGGTTGCCAGGTGCTGTTGTTCTCTGCCACGTTCAATGACACGGTGAAGAATTTTGTTTCAAGGGTTGTCAGAAAGGATCACAACCAATTATTTGTGAAGAGAGAAGAACTTTCCTTGGATGCAGTAAAACAATACAAGGTGAACTGTCCTGATGAACTCTCCAAGCTTGAGGTGGTCAAAGATTATATCTTTGAATTTGGAGAGAATGTGGGACAAACTATCATATTTGTTCGAACGAGGAATAGTGCCCAAATGTTGCACAAATCACTGACTGATATGGGTTATGAGGTCACTGCTATACAAGGGGCTCTTGATCATGAACAGAGAGATAAAATTGTCAGAGAGTTCAAAGATGGTCTCACTCAAGTACTTATTTCCACTGATGTACTTGCTCGTGGCTTTGATCAACAGCAGGTCAATTTGGTCATAAATTATGATCTTCCAGTGAAACATACCTCTGAGTTTAGTCGTGGTTTTGAACCTGATTATGAGGTGTATCTGCACAGAGTTGGCAGAGCAGGTCGCTTTGGCCGCAAGGGTGCAGTGTTTAATCTGATCTGTACTGAGAGAGATGAAAAACTAATGGCAAAGATTGAACAGCACTTTGGTGCAAGCGTCAATGAGGTCCGTGAGAAAAACGTAGAAGAATTCAAAGGTGCTCTCAAGTCTGCCGGTTTACTCTGA 1533 0.4318 MDSSSDNTAASTTSPPSSDTKWPAKETKSWADVAEEESLREDESSINAPPSSSKSNETPNLEGLTVDENKKPVNKFLDDPEDSNIKAVTSGDTPYTSASKFEDLKLSEDLIKGLYVEMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIDVLRKMGKYSGISSECAIPTDSRDTLPIQKRAPIMAQVVIGTPGTIKRWMQFKKLGVSRLKILVFDEADQMLAEDGFQDDSLRIMKDIQKLSPEAPGCQVLLFSATFNDTVKNFVSRVVRKDHNQLFVKREELSLDAVKQYKVNCPDELSKLEVVKDYIFEFGENVGQTIIFVRTRNSAQMLHKSLTDMGYEVTAIQGALDHEQRDKIVREFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTSEFSRGFEPDYEVYLHRVGRAGRFGRKGAVFNLICTERDEKLMAKIEQHFGASVNEVREKNVEEFKGALKSAGLL* 511
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01078 510 Gene3D - 322 504 IPR027417 -
Pte9g01078 510 Pfam Helicase conserved C-terminal domain 338 460 IPR001650 -
Pte9g01078 510 MobiDBLite consensus disorder prediction 25 43 - -
Pte9g01078 510 SMART ultradead3 119 328 IPR014001 -
Pte9g01078 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 312 IPR014001 -
Pte9g01078 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 480 IPR027417 -
Pte9g01078 510 CDD DEADc_DDX19_DDX25 106 313 - -
Pte9g01078 510 MobiDBLite consensus disorder prediction 1 24 - -
Pte9g01078 510 CDD SF2_C_DEAD 325 469 - -
Pte9g01078 510 Gene3D - 78 319 IPR027417 -
Pte9g01078 510 Pfam DEAD/DEAH box helicase 125 300 IPR011545 GO:0003676|GO:0005524
Pte9g01078 510 SMART helicmild6 367 460 IPR001650 -
Pte9g01078 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 501 IPR001650 -
Pte9g01078 510 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 61 479 - -
Pte9g01078 510 MobiDBLite consensus disorder prediction 1 92 - -
Pte9g01078 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 128 IPR014014 GO:0003724
Pte9g01078 510 MobiDBLite consensus disorder prediction 44 63 - -
Pte9g01078 510 MobiDBLite consensus disorder prediction 68 82 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte9g01078 Pte-Chr9 32380163 32386366 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01078 92 492 Eukaryotic Initiation Factors Gene Family AT1G72730 37.864 2.00e-72 234
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01078 K18655 - qsa:O6P43_010208 753.436