Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte9g01078 | ATGGATTCGAGTTCCGACAACACCGCCGCTTCTACTACTTCCCCACCTTCTTCTGATACCAAGTGGCCGGCGAAGGAGACGAAAAGCTGGGCTGATGTAGCTGAAGAAGAAAGCTTGAGAGAGGATGAATCATCGATAAATGCTCCTCCTTCAAGTTCAAAATCGAATGAAACGCCCAACCTCGAAGGGTTAACCGTGGACGAGAATAAGAAGCCGGTCAATAAGTTCCTTGACGATCCTGAGGACTCTAACATCAAAGCTGTTACATCAGGGGATACACCTTATACATCGGCGAGTAAGTTTGAAGACTTGAAGTTGTCTGAAGATCTAATAAAGGGGTTATATGTGGAGATGAAATTCCAGAAGCCTAGCAAAATTCAAGCTATAAGTTTGCCTATGATTTTGACTCCTCCTTATAAAGATTTGATTGCTCAAGCCCATAATGGTTCTGGAAAAACAACCTGTTTTGTGCTCGGGATGCTGAGTCGTGTTGATCCTAAGCTACAAGCCCCACAAGCACTCTGTATTTGTCCCACTAGAGAATTGGCCATTCAGAACATAGACGTTCTCCGGAAGATGGGAAAATATTCAGGAATCAGTTCAGAATGTGCCATACCAACTGATAGTAGGGATACTCTTCCAATACAGAAGAGGGCACCAATTATGGCTCAAGTAGTGATCGGCACCCCAGGAACCATAAAGAGATGGATGCAGTTCAAGAAATTGGGAGTCAGCCGTTTGAAGATCCTTGTCTTTGATGAGGCTGATCAAATGCTGGCAGAGGATGGTTTTCAAGATGATTCCTTGAGAATAATGAAAGACATCCAAAAACTCAGTCCTGAGGCTCCGGGTTGCCAGGTGCTGTTGTTCTCTGCCACGTTCAATGACACGGTGAAGAATTTTGTTTCAAGGGTTGTCAGAAAGGATCACAACCAATTATTTGTGAAGAGAGAAGAACTTTCCTTGGATGCAGTAAAACAATACAAGGTGAACTGTCCTGATGAACTCTCCAAGCTTGAGGTGGTCAAAGATTATATCTTTGAATTTGGAGAGAATGTGGGACAAACTATCATATTTGTTCGAACGAGGAATAGTGCCCAAATGTTGCACAAATCACTGACTGATATGGGTTATGAGGTCACTGCTATACAAGGGGCTCTTGATCATGAACAGAGAGATAAAATTGTCAGAGAGTTCAAAGATGGTCTCACTCAAGTACTTATTTCCACTGATGTACTTGCTCGTGGCTTTGATCAACAGCAGGTCAATTTGGTCATAAATTATGATCTTCCAGTGAAACATACCTCTGAGTTTAGTCGTGGTTTTGAACCTGATTATGAGGTGTATCTGCACAGAGTTGGCAGAGCAGGTCGCTTTGGCCGCAAGGGTGCAGTGTTTAATCTGATCTGTACTGAGAGAGATGAAAAACTAATGGCAAAGATTGAACAGCACTTTGGTGCAAGCGTCAATGAGGTCCGTGAGAAAAACGTAGAAGAATTCAAAGGTGCTCTCAAGTCTGCCGGTTTACTCTGA | 1533 | 0.4318 | MDSSSDNTAASTTSPPSSDTKWPAKETKSWADVAEEESLREDESSINAPPSSSKSNETPNLEGLTVDENKKPVNKFLDDPEDSNIKAVTSGDTPYTSASKFEDLKLSEDLIKGLYVEMKFQKPSKIQAISLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIDVLRKMGKYSGISSECAIPTDSRDTLPIQKRAPIMAQVVIGTPGTIKRWMQFKKLGVSRLKILVFDEADQMLAEDGFQDDSLRIMKDIQKLSPEAPGCQVLLFSATFNDTVKNFVSRVVRKDHNQLFVKREELSLDAVKQYKVNCPDELSKLEVVKDYIFEFGENVGQTIIFVRTRNSAQMLHKSLTDMGYEVTAIQGALDHEQRDKIVREFKDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTSEFSRGFEPDYEVYLHRVGRAGRFGRKGAVFNLICTERDEKLMAKIEQHFGASVNEVREKNVEEFKGALKSAGLL* | 511 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte9g01078 | 510 | Gene3D | - | 322 | 504 | IPR027417 | - | |
Pte9g01078 | 510 | Pfam | Helicase conserved C-terminal domain | 338 | 460 | IPR001650 | - | |
Pte9g01078 | 510 | MobiDBLite | consensus disorder prediction | 25 | 43 | - | - | |
Pte9g01078 | 510 | SMART | ultradead3 | 119 | 328 | IPR014001 | - | |
Pte9g01078 | 510 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 133 | 312 | IPR014001 | - | |
Pte9g01078 | 510 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 171 | 480 | IPR027417 | - | |
Pte9g01078 | 510 | CDD | DEADc_DDX19_DDX25 | 106 | 313 | - | - | |
Pte9g01078 | 510 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Pte9g01078 | 510 | CDD | SF2_C_DEAD | 325 | 469 | - | - | |
Pte9g01078 | 510 | Gene3D | - | 78 | 319 | IPR027417 | - | |
Pte9g01078 | 510 | Pfam | DEAD/DEAH box helicase | 125 | 300 | IPR011545 | GO:0003676|GO:0005524 | |
Pte9g01078 | 510 | SMART | helicmild6 | 367 | 460 | IPR001650 | - | |
Pte9g01078 | 510 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 341 | 501 | IPR001650 | - | |
Pte9g01078 | 510 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 61 | 479 | - | - | |
Pte9g01078 | 510 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
Pte9g01078 | 510 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 99 | 128 | IPR014014 | GO:0003724 | |
Pte9g01078 | 510 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - | |
Pte9g01078 | 510 | MobiDBLite | consensus disorder prediction | 68 | 82 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte9g01078 | Pte-Chr9 | 32380163 | 32386366 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte9g01078 | 92 | 492 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 37.864 | 2.00e-72 | 234 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte9g01078 | K18655 | - | qsa:O6P43_010208 | 753.436 |