Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01065 ATGGTCTGGGCCAGTCTTTCCCGGATCATGGAAGAGTTAATAAGGAAGCGTTTCCCGACTGGGCTAGGAACGGTTTTAACTGGCCTCCCTACGAACAGAAGTGCGAGGGAGAAAGGTAGCTTCGCCGTCACGAATACCACGATGGTCGTCTTCAGGTTTCATCAGTACCAGGTTGTTGGGAGAGGTCTCCCTACTGAGTCAGATGAGCATCCTAAGATTTACAGGATGAAGCTTTGGGCCACCAACGAAGTTCGTGCCAAATCAAAGTTCTGGTACTTTCTGAGGAAACTGAAAAAGGTGAAGAAAAGCAATGGTCAGATTCTAGCCATCAATGAGATATTTGAGAAAAATCCAACCAAAGTCAAGAATTATGGGATATGGCTTCGATATCAGAGTCGAACTGGTTACCACAATATGTACAAGGAGTACCGGGATACTACACTGAATGGTGCAGTTGAACAGATGTACACTGAGATGGCATCACGCCACAGAGTTAGGTTTCCATGCATACAGATAATCAAGACAACCACAGTCCCAGCAAAATTGTGCAAAAGGGAGAGCACAAAGCAGTTCCACAACTCAAAAATTAAGTTCCCCTTGGTGTTCAGGAAGGTCAGGCCCCCAACCAGGAAGCTCAAGACCACGTACAAGGCTTCTAGACCCAACTTGTTTATGTAA 678 0.4587 MVWASLSRIMEELIRKRFPTGLGTVLTGLPTNRSAREKGSFAVTNTTMVVFRFHQYQVVGRGLPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTKVKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTTTVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPTRKLKTTYKASRPNLFM* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01065 225 Gene3D - 43 116 - -
Pte9g01065 225 PANTHER 60S RIBOSOMAL PROTEIN L18A 49 224 IPR028877 -
Pte9g01065 225 Hamap 50S ribosomal protein L18Ae [rpl18a]. 53 116 IPR028877 -
Pte9g01065 225 FunFam 60S ribosomal protein L18a 48 118 - -
Pte9g01065 225 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 54 175 IPR023573 GO:0003735|GO:0005840|GO:0006412
Pte9g01065 225 SUPERFAMILY RplX-like 118 193 - -
Pte9g01065 225 Gene3D - 117 190 - -
Pte9g01065 225 FunFam 60S ribosomal protein L18a 119 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01065 Pte-Chr9 32259231 32261710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01065 13 226 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 79.907 3.06e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01065 K02882 - qsa:O6P43_032113 362.459