Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01052 ATGGCTCTTTTTAGGAATTATTCCAACGAACCAGTTTCTCAAAGTATTGTGGAGCAGAAAAATCAGGGACATGATGTTGATAGAATTGACACATCATTAGGGCATGAATACACTGATGAGATTTCCAGTGAGAAGGAATTCGACATGAATGTGCAGTATCAGAGTGATGGTGAACATGATGGTTCCAATAGACAGCAAAATGTGGCAACTACTGATGATGGAGTTGGTATGAGAGATTCAAACTTGACGTTGTCTGGTAGAAGAGCGGCTGTGACGGGAAAATGGGGTTCTAACTTTTGGAAGGATTGCCAGCCTTCTTCTCCCCAGAATGGGTCAGAATCAGGACAGGAGTCTAAAAGTGGATCCGAGTACAGGAATGAGGAAGAATCTGAAGATAACATGTTTGTCCAAGGGGAGGATAGGTTGGAGTCTGATGAAGATGGGGCAAAAGAAGTGGGAAAAGGTCACCAGGTTCACTGTGATGTCCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGTTGGATGGAGAAGAGCAGAGTGACTCGTTGCATTATAAGAGGAATCATCAAAATATTGGGTCGAATTCTGGGCTACAGAGAAAGCCTACTTCTGTCAGTAACCGTCTGAGAGCAAATGCTAGGGTTTTAGATGCTTCTGTAGATGGTGAATGCAGTGACGATGATGGCGAAAATAATGATGTTGGTGATGCGGACTATGAAGAAGAGGATGGAGCAGATGAAGATGATCCTGATGATGCTGATTTTGAACCTGTGACAAGTGGACTCGCAGCAATTAAGTATAAAGATTGGGAAGCTGAAGATTCAGATTCAGATGTTCATGATGATATAGATGTCTCTGATGATGACATTTCTTACCATGCAAAAAAATCTAAGGGGAAGCAAAGAGGTAGAGGTGGTCGGAATGTAAAATCAACTAAGGACCACAAATCTAATCGCCAGAGGAAAACTAAATCATCATTTGAAGAGGATGAGTACTCAGCAGAAGATTCTGATAGTGAAAGTGACCAGGACTTTGAAAGTACAAGACGAAGAGCAACAAATATTCGCAAAAGCACTAGCAGAGTGATACATGACAACGAGGTTCGCATGTCTAGTCGGTCTGTGAAGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAGGAAGTTGATGAAGGGAAGAAGAAGAAGCCTCAAAAGGAAGAGAATGAGGAAGAAGATGGTGATACTATTGAAAAGGTTCTGTGGCACCAGCCTAAGGGTGTGGCTGAAGATGCTCAAAGGAACAATCAATCAACGGAGCCTGTTTTGATTAGTCACTTGTTTGATGTTGAACCTGATTGGAATGAAATGGAATTTTATATTAAATGGAAAGGTCAATCACATCTGCATTGTCAATGGAAATCATTCTCTGAGCTGCAAAATCTCAGTGGTTTCAAGAAGGTACTAAATTATATTAAGAAAGTAATGGACGATATCAGGCACCGAAAGGCAGTCTCAAGGGAGGAGATTGAGGTCAATGATGTAAGCAAAGAGATGGATTTAGATTTGATTAAGCAGAACAGCCAAGTAGAGAGAGTAATTGCAGACCGAATTAGTAAAGACAAATGTGGTGATGTAATGGCTGAGTACTTGGTCAAGTGGCAAGGACTTTCTTATGCAGAAGCAACATGGGAGAAGGATGTGGATATTGCGTTCGCTCAACATTCCATTGATGACTATAAGGCTCGTGAGGCTGCGATGTCAATGCAAAGCAAAACAGTGGACCTCCAGCGCAAGAAGAGCAAAGCTAGTTTGAGGAAGCTTGATGAACAGCCTGAATGGTTAAAGGGGGGAAAACTTCGTGATTATCAACTGGAGGGTTTAAATTTTCTAGTAAACAGCTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGCCTTGGTAAAACTGTACAGTCTGTATCGATGCTTGGTTTTCTGCAGAATGCTCAGCAAATTCACGGCCCATTTCTTGTCGTCGTACCCTTGTCTACCTTGTCAAATTGGGCTAAAGAATTTAAAAGGTGGCTCCCTGATATGAATGTGATTGTGTATGTTGGCACCCGTGCAAGTAGAGAGTACAAACTGTTGCATCATACCAGCAAATTTGGCCGGGCATTGCTGCACTTCCTTGATCCAGATAAATTCAAGAATAAGGAAGATTTCGTACATAATTACAAGAATCTTAGTTCATTTAATGAGATTGAGCTTGCCAATCTTCATATGGAATTGAGGCCTCACATTCTCAGAAGGGTCATCAAGGATGTTGAGAAGTCTCTTCCACCTAAAATAGAGCGTATCCTTAGAGTTGAAATGTCTCCTTTGCAGAAACAATACTATAAGTGGATTTTGGAACGGAACTTCCATGACCTGAACAAAGGAGTTCGTGGGAATCAGGTTTCACTTCTAAATATTGTTGTGGAGTTGAAGAAGTGCTGCAACCACCCCTTTCTTTTTGAAAGTGCAGACCATGGTTATGGGGGCAACTTGGGGGTTAATGATAGTGGTAAGCTGGAGAGAATCATCTTAAGCAGTGGGAAGCTTGTGATACTTGATAAATTGCTTGTCAGATTGTATGAGACAAAGCATCGCGTTCTTATTTTTTCCCAGATGGTCAGGATGTTGGATATACTGGCAGAGTATATGTCTCTTCGAGGATTCCAATTCCAGAGGTTAGATGGTAGTACAAAAGCTGAGTTGCGCCAACAAGCAATGGACCATTTCAATTCTCCTGGTAGTGATGATTTCTGTTTTCTTCTTTCAACGCGTGCTGGAGGGTTGGGCATTAACCTCGCAACTGCTGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAACGATCTCCAGGCTATGAGTCGTGCTCATAGAATTGGGCAGCAAGATGTGGTCAACATCTATAGATTTGTGACCAGCAAAAGTGTGGAGGAAGATATATTGGAACGAGCAAAAAAAAAGATGGTTCTCGACCATTTGGTGATTCAAAAACTAAACGCAGAAGGAAGACTGGAGAAGAAGGAAACCAAAAAGGGGAATTTATTTGATAAAAGCGAGCTATCAGCAATCCTGAGATTTGGAGCTGAGGAGCTTTTTAAGGAAGATAAAAATGAAGAAGAAAGCAAGACAAGACTCTTAAGTATGGATATTGATGAGATACTTGAAAGAGCAGAGAAAGTTGAAGAGAAAGAAGCTGTGGAGGAAGGGAAAGAGCTGTTAGGTGCATTTAAGGTTGCCAATTTTTGTAGTGCTGAAGATGATGGGAGTTTTTGGAGTCGTTGGATAAAGCCTGATGCTATCACCCAAGCTGAAGAAGCTCTAGCTCCTCGAGCAGCAAGGAGTACCAAGAGCTATGCAGAGGCTAGTGTCACTGAGAGGACTAATAAACGGAGAAAGAAGGATCCTGAGCCTCAGGGAAGAGTCCCAAAACGCCGCAAAACAGAGAATTTAGTCCCTGCAGCACCCATGATAGAAGGAGCGACTGCTCAAGTGAGAAGTTGGTCATGCGGAAATTTGTCTAAAAAAGACGCATCACTTTTCTACCGTGCTGTGATGAAATATGGGGATCAGAGTAAACTGGACTACATAGTCGCTGAGGTTGGAGGCACTGTTGCAGGAGCTCCAGTTCGGGCACAAATTGAACTCTTTGATGCACTAATGGATGGATGCCAAGAAGCTGTTGAGATTGGAAGTTTGGATCCAAAGGGACCCGTATTGGATTTTTTTGGTTATTCAATTAAGGCCAACGATCTACTGGCTCGGGTGGAAGGATTTAAACTTCTTGCAAAGCGCATTAGTCGTTTTGAAGACCCAGTTGCCCAATTTCGTGTCTTGACATATCTGAAGCCTTCAAACTGGTCTAAAGGGTGCGGGTGGAATCAGATTGATGATGCAAAATTGCTTCTGGGGATACATTATCATGGATTTGGAAATTGGGAAGAAATAAGATTAGATGAAAGGCTTGGCCTAACAAAGAAGATTGCACCAGCAGAACTTCAACACCATGAAACCTTCCTACCTCGGGCTCCTAATTTGAGGGATCGTACTAACGCACTTCTGGAAATGGAACTTGCAGCTCATGGTGGTAAGAATACAGTATCTAAAGTGGGACGTAAACCTTCCAAGAAGGAAAAGGAAAACCTCCTGAATGTACAGTTGTCACGGGGAATAGAGAGGAAAGGGAAATCGGATACTGCCAAGGTCAATGCCCATGTTAACAAAGATAAAATCCAAAGAAAAACTAGAATTGAACATGTAGCGAAAGAAGAAGGTGAAATGTCTGACCATGAAGAAGTGTATGAGCATTTCAAGGACATGAAATGGATGGAGTGGTGTCAAGATGTCATGGTGGATGAAATGAAAACCCTGAAACGTCTTCAGAGGTTGCAGACTACAAGCGCCGATCTTCCACGAGAGAAGGTGCTTTCCAAAATTCGAAACTATTTGCAGCTTCTTGGACGAAAGATTGATCAAATTGTATTAGATTATGAGGAGGAGCCTTATAGACAAGATAGGATGACAATGCGATTGTGGAACTATGTCTCAACCTTTTCGAATCTTTCTGGGGAGAGACTCCATCAAATCTATGCTAAACTTAAGAAGGAGAAAAATGAGGAAGCTGCAGCTGGCCCATCGCATGCTAATGGTTCAGTGTCTGTTCCTTTTGGGCATTCTAACACTTTCCCCCGCAATCTAGAGAGACAAAGAGGGTACAAAGATGCTACAAACTACCACATGCCAGATTCAGTTCAAAGTTCTGGGAAGTTTGAGGCTTGGAAGCGGCAAAGAGAAGAAAGTGAGACCCATTTCCAGGTTCACCCACAATCTCAAAGAACCGTGGGTAGTGGAAGTAAATTATCAGATCCAAACTCACAAGGGATTCTTGGGGCTGGGCCCTCAGATAGACGTTTTGTTGGGGAGAAACCTTTTAGGACGCGTCAGACTGGTTTTCATCCACGACAAGGTATAAAGTAA 5001 0.4215 MALFRNYSNEPVSQSIVEQKNQGHDVDRIDTSLGHEYTDEISSEKEFDMNVQYQSDGEHDGSNRQQNVATTDDGVGMRDSNLTLSGRRAAVTGKWGSNFWKDCQPSSPQNGSESGQESKSGSEYRNEEESEDNMFVQGEDRLESDEDGAKEVGKGHQVHCDVPAEEMLSDEYYELDGEEQSDSLHYKRNHQNIGSNSGLQRKPTSVSNRLRANARVLDASVDGECSDDDGENNDVGDADYEEEDGADEDDPDDADFEPVTSGLAAIKYKDWEAEDSDSDVHDDIDVSDDDISYHAKKSKGKQRGRGGRNVKSTKDHKSNRQRKTKSSFEEDEYSAEDSDSESDQDFESTRRRATNIRKSTSRVIHDNEVRMSSRSVKKVSYVESEESEEVDEGKKKKPQKEENEEEDGDTIEKVLWHQPKGVAEDAQRNNQSTEPVLISHLFDVEPDWNEMEFYIKWKGQSHLHCQWKSFSELQNLSGFKKVLNYIKKVMDDIRHRKAVSREEIEVNDVSKEMDLDLIKQNSQVERVIADRISKDKCGDVMAEYLVKWQGLSYAEATWEKDVDIAFAQHSIDDYKAREAAMSMQSKTVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFKRWLPDMNVIVYVGTRASREYKLLHHTSKFGRALLHFLDPDKFKNKEDFVHNYKNLSSFNEIELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGNLGVNDSGKLERIILSSGKLVILDKLLVRLYETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNSPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKETKKGNLFDKSELSAILRFGAEELFKEDKNEEESKTRLLSMDIDEILERAEKVEEKEAVEEGKELLGAFKVANFCSAEDDGSFWSRWIKPDAITQAEEALAPRAARSTKSYAEASVTERTNKRRKKDPEPQGRVPKRRKTENLVPAAPMIEGATAQVRSWSCGNLSKKDASLFYRAVMKYGDQSKLDYIVAEVGGTVAGAPVRAQIELFDALMDGCQEAVEIGSLDPKGPVLDFFGYSIKANDLLARVEGFKLLAKRISRFEDPVAQFRVLTYLKPSNWSKGCGWNQIDDAKLLLGIHYHGFGNWEEIRLDERLGLTKKIAPAELQHHETFLPRAPNLRDRTNALLEMELAAHGGKNTVSKVGRKPSKKEKENLLNVQLSRGIERKGKSDTAKVNAHVNKDKIQRKTRIEHVAKEEGEMSDHEEVYEHFKDMKWMEWCQDVMVDEMKTLKRLQRLQTTSADLPREKVLSKIRNYLQLLGRKIDQIVLDYEEEPYRQDRMTMRLWNYVSTFSNLSGERLHQIYAKLKKEKNEEAAAGPSHANGSVSVPFGHSNTFPRNLERQRGYKDATNYHMPDSVQSSGKFEAWKRQREESETHFQVHPQSQRTVGSGSKLSDPNSQGILGAGPSDRRFVGEKPFRTRQTGFHPRQGIK* 1667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1546 1666 - -
Pte9g01052 1666 SUPERFAMILY Chromo domain-like 501 577 IPR016197 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1132 1156 - -
Pte9g01052 1666 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 706 IPR014001 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 97 165 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 99 119 - -
Pte9g01052 1666 ProSiteProfiles Chromo and chromo shadow domain profile. 522 586 IPR000953 -
Pte9g01052 1666 Gene3D - 1264 1379 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 41 84 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 120 165 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 188 211 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 344 409 - -
Pte9g01052 1666 Gene3D - 766 1081 IPR027417 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 47 78 - -
Pte9g01052 1666 SUPERFAMILY Chromo domain-like 405 489 IPR016197 -
Pte9g01052 1666 Gene3D - 395 522 - -
Pte9g01052 1666 Gene3D - 581 715 IPR038718 -
Pte9g01052 1666 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 770 1000 - -
Pte9g01052 1666 Pfam Domain of unknown function (DUF4208) 1448 1540 IPR025260 -
Pte9g01052 1666 Gene3D - 524 576 - -
Pte9g01052 1666 SMART chromo_7 520 579 IPR000953 -
Pte9g01052 1666 SMART chromo_7 407 490 IPR000953 -
Pte9g01052 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 763 1043 IPR027417 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1560 1574 - -
Pte9g01052 1666 ProSiteProfiles Chromo and chromo shadow domain profile. 409 497 IPR000953 -
Pte9g01052 1666 CDD CD2_tandem 520 576 - -
Pte9g01052 1666 FunFam protein CHROMATIN REMODELING 5 isoform X2 524 576 - -
Pte9g01052 1666 CDD SF2_C_SNF 846 980 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1614 1636 - -
Pte9g01052 1666 Pfam SNF2-related domain 633 701 IPR000330 GO:0005524|GO:0140658
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1115 1158 - -
Pte9g01052 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 731 IPR027417 -
Pte9g01052 1666 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 715 1601 - -
Pte9g01052 1666 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 859 1010 IPR001650 -
Pte9g01052 1666 SMART ultradead3 610 789 IPR014001 -
Pte9g01052 1666 Pfam Chromo (CHRromatin Organisation MOdifier) domain 523 577 IPR023780 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1 26 - -
Pte9g01052 1666 CDD CD1_tandem 407 487 - -
Pte9g01052 1666 FunFam Chromo domain-containing protein 1 397 522 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 223 256 - -
Pte9g01052 1666 SMART DUF4208_2 1436 1541 IPR025260 -
Pte9g01052 1666 Pfam SNF2-related domain 715 827 IPR000330 GO:0005524|GO:0140658
Pte9g01052 1666 SMART helicmild6 885 969 IPR001650 -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 1599 1613 - -
Pte9g01052 1666 MobiDBLite consensus disorder prediction 188 409 - -
Pte9g01052 1666 Pfam Helicase conserved C-terminal domain 856 969 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01052 Pte-Chr9 32098546 32112596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01052 875 1032 RAD5 or RAD16-like Gene Family AT5G05130 35.849 9.57e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte9g01052 Helicase_C 2.5e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01052 K11367 - cave:132163242 1471.06