Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g01015 ATGTCAAGTGAAGGCACACATTGGTGTTATCAGTGCAGACAGCCAATCTGGCTTCAAGGAAGAGATCTCACATGCCCTTATTGTGACGGAGGTTTCGTTCAAGAACTTGGTGATATGCAAGATTTTGCACCACAAGATTCCTTTACTTCTCGTTCAGCTGAAATTCCAGACATGATAGACTCTATAAATTCTTTCCTTAGGAGGCCTGTTGAACCTAGGTTTGGTCATTCAGACGATATTGCAGACGTAATAGACTCTATAAATGCTTCCCTCAGGAGGAGGCATGCAGCGCACACTGATCCAAGATTTGCTGACAGGATAGACTCTATAAATGCTTCTCTTCGGAGGCCTCCCGTTGAACCTAGACTTGGTCTTATGGATGCTTTTGATGCTGTTGTTCGGCACAGAATGGCTGGAAGGCATCCAAATTTTGATGTCAGAGGGAGGTCTGCTACTGTTCCTGAACAAAGCTGGGGTGTGTTCAGTTCTGGTCCTTATGTAGTTGTCCATGGTCCAGTTCCCTTTTCCAACGGTACACATAGAGTAGGTCCTAGATCAATTGATTTTGGTGACTACTTTATGGGCCCTGGATTAGAAGAACTGATTGAACAGCTTACCCTGAATGATCGACAGGGTGCACCCCCAGCACCACGTTCTTCAATCGAAGCAATGCCCACCATTAAGATCACAAATGTGCATCTTCGTGCTGATTCACACTGCCCTGTCTGTCAAGAAAAATTCGAACTTGGCACAGAAGCTAGGGAGATGCCATGCAATCACATCTATCATTCTGACTGTATTGTCCCTTGGTTGGTTCAGCACAATACATGCCCTGTTTGCCGTGTTGAGTTGCCTCCTCAAGGTCATGTGAATTCTCAAAGTCGAAGTTGGGCTGCAGGGGGTGCTAGTGGTGGCAGGAATGGCGAAAGCACTGCCGATAGTGATGGTGGTCGGCCTAACCAGGGGAGGAGAAATCCATTTTCATTTCTCTGGCCGTTCCGCTCATCCAATTCAAACCCTCATGCATACTCCGAGGCTGGAGGAAGCAGTTCTGCAACAAGTAATGACCAGAACAATGGAATGGATCATTATGGATGGCGCTATATTGACTAG 1113 0.4654 MSSEGTHWCYQCRQPIWLQGRDLTCPYCDGGFVQELGDMQDFAPQDSFTSRSAEIPDMIDSINSFLRRPVEPRFGHSDDIADVIDSINASLRRRHAAHTDPRFADRIDSINASLRRPPVEPRLGLMDAFDAVVRHRMAGRHPNFDVRGRSATVPEQSWGVFSSGPYVVVHGPVPFSNGTHRVGPRSIDFGDYFMGPGLEELIEQLTLNDRQGAPPAPRSSIEAMPTIKITNVHLRADSHCPVCQEKFELGTEAREMPCNHIYHSDCIVPWLVQHNTCPVCRVELPPQGHVNSQSRSWAAGGASGGRNGESTADSDGGRPNQGRRNPFSFLWPFRSSNSNPHAYSEAGGSSSATSNDQNNGMDHYGWRYID* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g01015 370 ProSiteProfiles Zinc finger RING-type profile. 240 281 IPR001841 -
Pte9g01015 370 Pfam Ring finger domain 239 281 IPR001841 -
Pte9g01015 370 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Pte9g01015 370 MobiDBLite consensus disorder prediction 289 370 - -
Pte9g01015 370 SUPERFAMILY RING/U-box 220 287 - -
Pte9g01015 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 129 285 - -
Pte9g01015 370 SMART ring_2 240 280 IPR001841 -
Pte9g01015 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 287 IPR013083 -
Pte9g01015 370 FunFam E3 ubiquitin-protein ligase RING1-like 204 287 - -
Pte9g01015 370 MobiDBLite consensus disorder prediction 330 361 - -
Pte9g01015 370 CDD RING-H2_RNF126-like 240 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g01015 Pte-Chr9 31599257 31600369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g01015 184 285 C3H Transcription Factor Family AT5G01980 44.231 3.98e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g01015 K11982 - gmx:100813674 419.083