Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00984 ATGGCCAAGAAACGAAAGCTTCGATCTTCCGAACCAGAACACACCATGACAACCGAATCACAACCCCAAGATTACTTGACAGAGGATCAGCAACAACAGACACAACCCGAGTCTGAACACTTCCAACCAGTACAAACCAATCCACTGAAACCAGATTCCATGGCCATCGACGAAGCTCGAGAAGAGAAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGATGGAGAAGGGGGGGCTCAGGGGAATGAGCCGGTTGAGTCAAAATTAACTGCTAAACCAGAAGTTAATGGACACGAAGACGGGGAAGAAACGGCAGACTTGGAAGAAGAGCCTGTAGAGAAGCTTCTTGAGCAGTTTACGAAGGAGCAGTTGCTTTCTCTTGTCAAGAGAGCTTTGGAGAAGTATCCTGATTTTGCAGACGGCGTGCGTGAGCTTGCAGACCAAGACCCTGCTCACAGGAAGATTTTCATTCATGGGCTTGGGTGGGACACTACGGCCGAAACTCTAACTAGTGTGTTTGGTAAGTATGGTGAGATTGAGGACTGTAAGCATGTTACTGATAGAGTGTCTGGGAAATCTAAAGGCTATGCCTTCATACTCTATAAGCATCGTGATGGGGCGCGTAGGGCATTGAAAGATCCTCAGAAGCTGGTTGGGAATAGGACAGCTTCGTGTCAACTCGCCTCAGTTGGACCTATTTCCACACCACAGCCTGCAGCGACTCCACTAGTTTCTGAGTATACCCAGAAGAAGATTTTTGTGAGTAATGTTGGTGCTGAGGTAGATCCCCAGAAACTGCTGAAATTTTTCAGACAGTTTGGTGAGATTGAAGAAGGTCCATTGGGTCTTGATAAGCAGACAGGGAAGCCTAAAGGGTTTGCATTATTTGTGTACAAGTATGTTCAGAGTGCTAAGAAAGCTATGGAAGTGCCTCATAAGAATTTTGAGGGTCATATATTGCATTGCCAGAAGGCTATTGATTGGCCTAAGCATAATAAAGGATTTCATCAACAGCAGTATCACGATTATTCTTCTCCTCATCAGCAGCCACATTCACATTATCATTCTAGAAAAGACAAGGATAAGTATTCATCAGTTATAGGAGCCGAAATAGGACCTGGAAACCTGCTTGGAGGTATTGGTGGAGTTCCTATGAGCCAATCTACACTACCAGCTACTTATACTAATCAGACTCCTGGGACTTATGGAAATCAGCCGGCAATGCAGCTAGGATACCAGAATCCACAACTTGGGCAGAGCAGTTCGGTGAGGCCTCACCCTGGAAGTGGTGCACCTTACATGGTCATTAGGTGGGTGTCTGTGTTATATGTTTTTGGTTTTTAG 1341 0.4571 MAKKRKLRSSEPEHTMTTESQPQDYLTEDQQQQTQPESEHFQPVQTNPLKPDSMAIDEAREEKEEEEEEEEEDGEGGAQGNEPVESKLTAKPEVNGHEDGEETADLEEEPVEKLLEQFTKEQLLSLVKRALEKYPDFADGVRELADQDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKHVTDRVSGKSKGYAFILYKHRDGARRALKDPQKLVGNRTASCQLASVGPISTPQPAATPLVSEYTQKKIFVSNVGAEVDPQKLLKFFRQFGEIEEGPLGLDKQTGKPKGFALFVYKYVQSAKKAMEVPHKNFEGHILHCQKAIDWPKHNKGFHQQQYHDYSSPHQQPHSHYHSRKDKDKYSSVIGAEIGPGNLLGGIGGVPMSQSTLPATYTNQTPGTYGNQPAMQLGYQNPQLGQSSSVRPHPGSGAPYMVIRWVSVLYVFGF* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00984 446 Gene3D - 236 364 IPR012677 -
Pte9g00984 446 SUPERFAMILY RNA-binding domain, RBD 145 228 IPR035979 GO:0003676
Pte9g00984 446 MobiDBLite consensus disorder prediction 1 108 - -
Pte9g00984 446 MobiDBLite consensus disorder prediction 335 358 - -
Pte9g00984 446 Coils Coil 53 76 - -
Pte9g00984 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 152 229 IPR000504 GO:0003723
Pte9g00984 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 38 329 - -
Pte9g00984 446 MobiDBLite consensus disorder prediction 59 78 - -
Pte9g00984 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 325 IPR000504 GO:0003723
Pte9g00984 446 SUPERFAMILY RNA-binding domain, RBD 238 338 IPR035979 GO:0003676
Pte9g00984 446 MobiDBLite consensus disorder prediction 14 49 - -
Pte9g00984 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 154 219 IPR000504 GO:0003723
Pte9g00984 446 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 319 IPR000504 GO:0003723
Pte9g00984 446 Gene3D - 52 232 IPR012677 -
Pte9g00984 446 SMART rrm1_1 250 322 IPR000504 GO:0003723
Pte9g00984 446 SMART rrm1_1 153 225 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00984 Pte-Chr9 31342375 31343825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00984 245 328 C2H2 Transcription Factor Family AT2G19380 32.143 4.54e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00984 K12741 - cave:132163241 496.123