Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00944 ATGCCAGAAAACCGGCAAGCCCAGAAACTGAAGAGTGACGTTTCTTCTAATCAATCTGATACTAATATTGAAGAGGCCATTCAGCGTTTGAAAATCAATGATAAACATGATATTGATGCTGTTGTATCATCCATCCCCTACCCAGATCGGCCTGGTGAGCCTGATTGCTCATACTATTTGAAGACTGGGACCTGCAGTTACGGAAGTCACTGTCGCTATAATCATCCTGCTTATATACCAAATGGTGTTAAGTACGGTGGTGAACTACCAGAAAGAGTTGGGCAACCAGATTGTGGGTACTTTCTGAAAACAGGAACTTGTAAGTATGGATCTACGTGTAAGTACCATCATCCAAGGGACAGAAGAGGTGCTGCTCCAGTGTCCATCAATTCTGTTGGTCTTCCCATGCGTCCGGATGAAAAACCATGTCCCTATTACATGCGGACAGGGTCGTGTAAGTTTGGAATTGGTTGCAAGTTTCATCATCCACAGCCTGCAGGAAGCGTCTTACCTCTAGCCTCCTCAGTTATTCCTTCATCAACTCTACCTTATGCTGGTGGATATCCTGCATGGTCAATGCCTAGGATGTCATATGTCACTGGTCCACATGGATTGCCAGTTTATGTTTCTCCTTCTCAAGGAGTTCTACCTGTACAAAGCTGGAACGCCTACATGGGAAACTTGGACCCTGCATCATCTACCAGCATGCTTGGGTCCAATCTTGCTTACAACTCTGCCAACTCGAGTGACCTTGGTTCAACCAATTTCCCTCAGAGACCTGATCAACCAGAGTGCCGACATTTTATCACCACAGGGACCTGCAAGTATGGATCTGATTGCAAGTTCAACCATCCTAAAGAAAGAGTGGCTCAATCCCTTCCAAATTCATTTGGCTTTCCCATGAGACCTGGGCAAGCAATCTGTTCGTATTTTAGAGTTTATGGATATTGCAAATATGGTTCAACATGCAAATTTGATCACCCAATGATGGCACACCCTTATAACTATACCTTGAACCAGCTTTCTGTCGCTGCGCATGATACATTTCTTTCAAGTTACCCAATGAACGTGCCAACAGTTCAGTCATCTGAAAGTTTTCCTATCAAGTCATCAAAATCACCTGAGTTGGCTCAGAAGCCCAATTTTGTTAGAGACAAGCACCAAAAATCTGATGCTAAGGCCACTGAAAATCCATCTAATCCTCCAGATTCTCCGAGCAGGACTTCCTTGATAGACTTTTCAGAGTCTTCGCATGATTCTTCTCACTGA 1269 0.4413 MPENRQAQKLKSDVSSNQSDTNIEEAIQRLKINDKHDIDAVVSSIPYPDRPGEPDCSYYLKTGTCSYGSHCRYNHPAYIPNGVKYGGELPERVGQPDCGYFLKTGTCKYGSTCKYHHPRDRRGAAPVSINSVGLPMRPDEKPCPYYMRTGSCKFGIGCKFHHPQPAGSVLPLASSVIPSSTLPYAGGYPAWSMPRMSYVTGPHGLPVYVSPSQGVLPVQSWNAYMGNLDPASSTSMLGSNLAYNSANSSDLGSTNFPQRPDQPECRHFITTGTCKYGSDCKFNHPKERVAQSLPNSFGFPMRPGQAICSYFRVYGYCKYGSTCKFDHPMMAHPYNYTLNQLSVAAHDTFLSSYPMNVPTVQSSESFPIKSSKSPELAQKPNFVRDKHQKSDAKATENPSNPPDSPSRTSLIDFSESSHDSSH* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00944 422 MobiDBLite consensus disorder prediction 379 393 - -
Pte9g00944 422 SUPERFAMILY CCCH zinc finger 136 165 IPR036855 GO:0046872
Pte9g00944 422 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872
Pte9g00944 422 Gene3D - 242 297 - -
Pte9g00944 422 Gene3D - 6 86 - -
Pte9g00944 422 MobiDBLite consensus disorder prediction 1 22 - -
Pte9g00944 422 Gene3D - 300 363 - -
Pte9g00944 422 Gene3D - 90 172 - -
Pte9g00944 422 MobiDBLite consensus disorder prediction 7 22 - -
Pte9g00944 422 MobiDBLite consensus disorder prediction 394 422 - -
Pte9g00944 422 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Pte9g00944 422 SUPERFAMILY CCCH zinc finger 55 76 IPR036855 GO:0046872
Pte9g00944 422 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Pte9g00944 422 MobiDBLite consensus disorder prediction 361 422 - -
Pte9g00944 422 PANTHER PROTEIN PHOSPHATASE RELATED 7 359 - -
Pte9g00944 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 304 329 IPR000571 GO:0046872
Pte9g00944 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Pte9g00944 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 52 76 IPR000571 GO:0046872
Pte9g00944 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Pte9g00944 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 286 IPR000571 GO:0046872
Pte9g00944 422 SUPERFAMILY CCCH zinc finger 301 328 IPR036855 GO:0046872
Pte9g00944 422 SUPERFAMILY CCCH zinc finger 262 288 IPR036855 GO:0046872
Pte9g00944 422 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Pte9g00944 422 SMART c3hfinal6 50 77 IPR000571 GO:0046872
Pte9g00944 422 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Pte9g00944 422 SMART c3hfinal6 259 286 IPR000571 GO:0046872
Pte9g00944 422 SMART c3hfinal6 302 329 IPR000571 GO:0046872
Pte9g00944 422 SMART c3hfinal6 139 164 IPR000571 GO:0046872
Pte9g00944 422 MobiDBLite consensus disorder prediction 361 377 - -
Pte9g00944 422 ProSiteProfiles Zinc finger C3H1-type profile. 259 287 IPR000571 GO:0046872
Pte9g00944 422 ProSiteProfiles Zinc finger C3H1-type profile. 50 78 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00944 Pte-Chr9 30823767 30828497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00944 7 333 C3H Transcription Factor Family AT1G04990 51.156 1.60e-112 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte9g00944 zf-CCCH 3.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00944 - - cave:132182298 532.332