Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00938 ATGAAGAAGCAAACGATGGGGAGGAAAAAGCTTGAGCTGAAAAAGATAGAGAATGAGAGAGATCTCGTGGTGAGTTTCACAAAGCGAAAAACTGGTGCATTGAAGAAGGCAAGTGAGTTGGCAACACTGACAGGTGCAGAAGTAGCTTTCTTGTGCTTTTCCCCTGCTGGAAAGCCTTACTGTTTTGCTCATCCTTCATTTGATTCTGTTACTAAGAATTTTCTGAATCAAAACTCAACATCGACGACGAAAAACAGCTATGAACAGTCTGTCGTTGATGCTCATAGAAATGCAAAAACTTCTGAAATTTACAAGCAGTGTAACGAGTTGACTTATCAACTTGAAGCCGCAATAGCTGAAGGCAAGAGAATAGAGGAGACATGGAAGGGAAAGGACACCAGTGGTTGGTGGACTGCTGGTCCTTATCTTTCCGAGGAAAAGATGAAACAAATGAATGAAAATTATATGGATCTGTACAGAAGACTGATCGATCAAGTCAGTGAGAAAGGTGATGTGCCTCCATTTTCATCTGGGATTGCACCTTCTTATGCAGGTAACCAGTATAATCATATTACTCTACTTGCTGCTTCATTAGCTAATCAAATTTATACAGGAACAAGTGAGAGACTTCCTCCCTATACGTTGTACCCCATGACCAATAGTCTTGGAGTTGGAGGAGGTGCTGCAACCCTAGTCTCTGATGTAATTGGAAGCCAAAACGGTGGTGGCCCTTTAAGCTTTAATTGA 747 0.4163 MKKQTMGRKKLELKKIENERDLVVSFTKRKTGALKKASELATLTGAEVAFLCFSPAGKPYCFAHPSFDSVTKNFLNQNSTSTTKNSYEQSVVDAHRNAKTSEIYKQCNELTYQLEAAIAEGKRIEETWKGKDTSGWWTAGPYLSEEKMKQMNENYMDLYRRLIDQVSEKGDVPPFSSGIAPSYAGNQYNHITLLAASLANQIYTGTSERLPPYTLYPMTNSLGVGGGAATLVSDVIGSQNGGGPLSFN* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00938 248 Gene3D - 18 90 IPR036879 GO:0003677|GO:0046983
Pte9g00938 248 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 SUPERFAMILY SRF-like 6 88 IPR036879 GO:0003677|GO:0046983
Pte9g00938 248 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Pte9g00938 248 PANTHER MADS BOX PROTEIN 8 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00938 Pte-Chr9 30718019 30718765 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00938 3 169 Type I MADS-box Gene Family AT1G28460 37.640 8.70e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte9g00938 SRF-TF 2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00938 - K12412 tcc:108662457 147.902