Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00936 ATGAAGAAGCAAACGATGGGGAGGAAAAAGCTTGAGCTGAAAAAGATAGAGAATGAGAGAGATCTCGTGGTGAGTTTCACAAAGCGAAAAACTGGTGCATTGAAGAAGGCAAGTGAGTTGGCAACACTGACAGGTGCAGAAGTAGCTTTCTTGTGCTTTTCCCCTGCTGGAAAGCCTTACTGTTTTGCTCATCCTTCATTTGATTCTGTTACTAAGAATTTTCTGAATCAAAACTCAGCATCGACGACGAAAAACAGATATGAACAGTCTGTCGTTGATGCTCATAGAAATGCAAAAACTTCTGAAATTTACAAGCAGTGTAACGAGTTGACTTATCAACTTGAAGCCGCAATAGCTGAAGGCAAGAGAATAGAGGAGACATGGAAGGGAAAGGACACCAGTGGTTGGTGGACTGCTGGTCCTGAAAACCTTTCCGAGGAAAAGATGAAACAAATGAATGAAAATTATATGGATCTATACAGAAGACTGATCGATCAAGTCAGTGAGAAAGGTGATGTGCCTCCATTTTCATCTGGGATTGCACCTTCTTATGCAGGAACAAGTGTGAGACTTCCTCCCTATACGTTGTACCCCATGACCAATAGTCTTGGAGTTGGAGGAGGTGCTGCAACCCTAGTCTCTGATGTAATTGGAAGCCAAAACGGTGGTGGCCCTTTAAGCTTTAATTGA 690 0.4261 MKKQTMGRKKLELKKIENERDLVVSFTKRKTGALKKASELATLTGAEVAFLCFSPAGKPYCFAHPSFDSVTKNFLNQNSASTTKNRYEQSVVDAHRNAKTSEIYKQCNELTYQLEAAIAEGKRIEETWKGKDTSGWWTAGPENLSEEKMKQMNENYMDLYRRLIDQVSEKGDVPPFSSGIAPSYAGTSVRLPPYTLYPMTNSLGVGGGAATLVSDVIGSQNGGGPLSFN* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00936 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 62 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 PRINTS MADS domain signature 43 64 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 PRINTS MADS domain signature 28 43 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 PRINTS MADS domain signature 8 28 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 Gene3D - 18 90 IPR036879 GO:0003677|GO:0046983
Pte9g00936 229 ProSiteProfiles MADS-box domain profile. 6 66 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 SMART madsneu2 6 65 IPR002100 GO:0003677|GO:0046983
Pte9g00936 229 SUPERFAMILY SRF-like 6 88 IPR036879 GO:0003677|GO:0046983
Pte9g00936 229 PANTHER MADS BOX PROTEIN 8 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00936 Pte-Chr9 30684608 30685549 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00936 3 170 Type I MADS-box Gene Family AT1G28460 37.079 7.40e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte9g00936 SRF-TF 1.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00936 - K12412 qsa:O6P43_032107 152.525