Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00931 ATGAGGCCGATTTTGATGAAAGGCCATGAAAGGCCATTGACATTCTTAAAGTACAACAGAGATGGAGACCTCCTTTTCTCTTGTGCTAAAGATCACAACCCCACCGTGTGGTTCGCCGACAACGGTGAACGATTAGGAACATATCGCGGTCACAACGGTGCCGTTTGGTCCTGTGATGTTTCCAGAGATTCAATGCGGTTGATAACGGGTAGCGCTGATCAGACGGTGAAGTTATGGAACGTTCAAACTGGGCAACAATTGTATACTTTTAATTTTGATTCACCAGCAAGATCTGTGGAATTCTCCGTTGGAGATAAGCTTGCTGTGATTACTAGTGATCCTTTCATGGAATTGACTTCTGCTATTCATGTCAAACGAATTGCTCGAGACCCAAGTGATCAAACTGGTGAATCAGTTCTTATCATCAAGGGACCTCATGGAAGAATTAATAGAGCTGTTTGGGGACCTTTGAACAAGACCATAATCAGTTCTGGGGAGGATGCCGTGATTCGCATTTGGGATTCTGAGACCGGAAAATTATTGAAGGAGTCTGAAAAGGAGTCTGGGCACAAAAAGACAGTAACATCACTTGTAAAATCTGCTGACGGTTCGCATTTCCTCACTGGTTCCCTGGATAAATCTGCCAAACTTTGGGATAGCAGAACATTGACACTGATCAAGACGTATGTGACAGAGAGGCCAGTCAATGCTGTTGCAATATCTCCACTTCTTGATCATGTCGTGCTTGGTGGTGGTCAGGATGCTTCATCTGTCACAACAACTGATCATCGTGCTGGGAAGTTTGAAGCCAAATTCTATGATAAGATTCTTCAAGAAGAAATAGGAGGTGTTAAAGGACACTTTGGACCGATAAATGCCTTGGCTTTCAATCCTGATGGGAAAAGGTCCCTTTCTGTTACTCCTTATTTCGTTTACTTGACGGCTTTTATTGAAAGATCCTTTTTTGAGATACAACCATCTGCACTCCTTAATTACTTACAAACATACACCGTCTAG 1017 0.4297 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWSCDVSRDSMRLITGSADQTVKLWNVQTGQQLYTFNFDSPARSVEFSVGDKLAVITSDPFMELTSAIHVKRIARDPSDQTGESVLIIKGPHGRINRAVWGPLNKTIISSGEDAVIRIWDSETGKLLKESEKESGHKKTVTSLVKSADGSHFLTGSLDKSAKLWDSRTLTLIKTYVTERPVNAVAISPLLDHVVLGGGQDASSVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKRSLSVTPYFVYLTAFIERSFFEIQPSALLNYLQTYTV* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Pte9g00931 338 Gene3D - 1 323 IPR015943 GO:0005515
Pte9g00931 338 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Pte9g00931 338 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Pte9g00931 338 PRINTS G protein beta WD-40 repeat signature 161 175 IPR020472 -
Pte9g00931 338 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 309 IPR027525 GO:0003743|GO:0005737|GO:0005852
Pte9g00931 338 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Pte9g00931 338 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 303 - -
Pte9g00931 338 Pfam WD domain, G-beta repeat 188 219 IPR001680 GO:0005515
Pte9g00931 338 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Pte9g00931 338 Pfam WD domain, G-beta repeat 146 174 IPR001680 GO:0005515
Pte9g00931 338 CDD WD40 7 305 - -
Pte9g00931 338 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 222 - -
Pte9g00931 338 SMART WD40_4 1 38 IPR001680 GO:0005515
Pte9g00931 338 SMART WD40_4 177 219 IPR001680 GO:0005515
Pte9g00931 338 SMART WD40_4 41 80 IPR001680 GO:0005515
Pte9g00931 338 SMART WD40_4 135 174 IPR001680 GO:0005515
Pte9g00931 338 SMART WD40_4 222 262 IPR001680 GO:0005515
Pte9g00931 338 SMART WD40_4 277 315 IPR001680 GO:0005515
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Pte9g00931 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Pte9g00931 338 SUPERFAMILY WD40 repeat-like 4 304 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00931 Pte-Chr9 30639129 30642781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00931 1 301 Eukaryotic Initiation Factors Gene Family AT2G46290 79.208 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00931 K03246 - qsa:O6P43_032380 580.096