Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00910 ATGGAGAAATCCATGGCCAAGACAAGACCATCTTCTTCTATGCAGAAGAGAGCATTGAGAAAGGTGTATACAAGAGAGACAGTATGTCGTGGACGGCGACGATGGAAGTCCGTGCGTAATCAAGAGTCACAACGGTTCAAAGTGAAGACAATCCATTTCCAACTACAACTTCTTCTTATCTGTCTCTCTGTTCCAAGGTCCATTTACGTTTCACGGGGTTTCAAACTCCAAGAGGCCATGTCCGACCGCTCTTCAAGTTGCACCGTTTATATTGGAAATCTAGATGAGAAGGTGACAGAGAGAATCTTGTATGATATATTAATCCAGGCAGGGCAAGTGGTAGATCTGCACATGCCCAGAGACAAAGAAACTGGAAAACCAAAAGGTTTTGCTTTTGCTGAATATGAAACTGAAGAGATTGCAGATTATGCAGTCAAACTTTTCTCAGGTCTTGTGACACTTTACAACAGGACATTGAGGTTTGGGATATCTGGACAAGACAGAGCCTATCCTAATGGTTCTTTGTCAATCACACCCACTTCAAATTCTACTTACAGATCCAGATCTAACCCTGATCAAATAAATAATGACGGGCAACAGCACTCTGTTAGGTTGTCAGCACCTTGTGGATTTTCTGGTTATCCCCAAAGTAACTCATATCAAGTTTCCCCTCGTGTAAATAATCAATCTAATGGCTGTGGATCACATTATGGTGGCAACAATTATGAAAACAGCCGTTCAGTATATGGGGCAGCCTCAGATAGATTTAGCCAACCTAGGTCCCGACGCTATGATACAAGCAACCCAATATCTTATCCATATTACTGA 828 0.4215 MEKSMAKTRPSSSMQKRALRKVYTRETVCRGRRRWKSVRNQESQRFKVKTIHFQLQLLLICLSVPRSIYVSRGFKLQEAMSDRSSSCTVYIGNLDEKVTERILYDILIQAGQVVDLHMPRDKETGKPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLRFGISGQDRAYPNGSLSITPTSNSTYRSRSNPDQINNDGQQHSVRLSAPCGFSGYPQSNSYQVSPRVNNQSNGCGSHYGGNNYENSRSVYGAASDRFSQPRSRRYDTSNPISYPYY* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00910 275 MobiDBLite consensus disorder prediction 218 239 - -
Pte9g00910 275 MobiDBLite consensus disorder prediction 171 200 - -
Pte9g00910 275 CDD RRM1_SF3B4 89 161 IPR034158 -
Pte9g00910 275 SUPERFAMILY RNA-binding domain, RBD 73 164 IPR035979 GO:0003676
Pte9g00910 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 166 IPR000504 GO:0003723
Pte9g00910 275 MobiDBLite consensus disorder prediction 252 275 - -
Pte9g00910 275 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 80 272 - -
Pte9g00910 275 SMART rrm1_1 88 162 IPR000504 GO:0003723
Pte9g00910 275 Gene3D - 73 253 IPR012677 -
Pte9g00910 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00910 Pte-Chr9 30342821 30348431 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00910 83 152 Eukaryotic Initiation Factors Gene Family AT4G34110 31.429 1.57e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00910 K12831 - gmx:100803118 253.062