Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00890 ATGGCAGAGGCTTCAAGAGGACTCTACACTACACTGATGCCACTTTTCAATCCGATTCACAGAACCCATGTGCCTCTCCATTCCCAAGCAGTTTTGAAGAAGTATCCGATTCATTGCTCAGTTTCTACAGATGATACAAGAAAAGGTGTGGCTACAGAGACTGTTCCTTGGGGTTGTGAGAGTGATTCGTTGGAAAATGCTTCAGCTTTGCAGAAATGGTTATCTGATTCTGGACTCCCACCTCAGAAGATGGATATACGGAGAGTGGATGTGGGGGAGAGAGGACTGGTTGCTTTAAAGAATATAAGGAAGGGAGAAAAGTTGCTCTTCGTGCCTCCTCCGCTTGTCATCACTGCAGATTCTGAATGGAGCTGTCCTGAAGCAGGTGAAGTACTGAAGAGGAATTCAGTACCAGATTGGCCATTGCTTGCAACCTATCTTATCAGTGAATCCAGCATCATGAGAGCTTCAAGATGGAGCAGTTATATATCAGCTTTGCCTCGACAACCATATTCACTTCTTTACTGGTCACAAGCAGAACTAGATAGATATCTTGAAGCATCACAAATCAGGGAAAGAGCAATGGAAAGGATTAATAATGTCATTGGAACATACAATGATCTAAGGCTCAGGATATTCTCTAAGTACCCAGATGTGTTTCCTGAAGAGGTGTTCAATATGGAAACTTTCAAATGGTCATTTGGCATTCTTTTCTCTCGCTTGGTCAGATTACCCTCAATGGATGGAAAGGTTGCTCTTGTGCCATGGGCAGATATGCTGAACCATAGTTGTGAAGTAGAGGCGTTTTTGGACTATGACAGATCATCTCAGGGAATTGTCTTTACTACAGATCGACCGTACCAGCCAGGTGAGCAGGTTTTTATCTCTTATGGAAAGAAATCTAATGGAGAGCTTTTGCTATCTTATGGGTTTGTTCAAAAGGAAGGCACCAACCCCAGTGACTCGGTTGAATTGACACTGTCACTTAAGAAGTCTGACAAATGTTTCAAAGAAAAGTTGGAAGCCTTGAGAAAGCATCAGTTGTCTGGGACACAGTGTTACCCCATACAAATCACTGGATGGCCTCTGGAACTGATGGCTTATGCCTATTTAGTTGTCAGTCCTCCAAGCATGCAAGGGCAGTTTGAAGAGATGGCTGCGGCAGCATCAAATAAAACAGACATCAAGAAGAATATGAGATACCCTGAATTAGAGGAAGAAGCATTACAGTTCATACTGGACAGCTGTGAATATAGTATATCAAAGTACAACAAGTTCTTACAGGAAAGTGGATCCCTGGATTTGGACGTTGCTTCTCCAAAACAACTAAATCGAAGACTTTTTTTGAAACAGTTGGCACTAGACTTGTGTACCAGTGAAAGGAGAATACTTTTTCGTACTCAATATATATTGAGAAGACAGTTACGGGATTTGAGAAGTGGTGAACTAAGAGCTCTAAGAATCTTTGATGGGTTCAGGAATCTGTTCAAATGA 1494 0.421 MAEASRGLYTTLMPLFNPIHRTHVPLHSQAVLKKYPIHCSVSTDDTRKGVATETVPWGCESDSLENASALQKWLSDSGLPPQKMDIRRVDVGERGLVALKNIRKGEKLLFVPPPLVITADSEWSCPEAGEVLKRNSVPDWPLLATYLISESSIMRASRWSSYISALPRQPYSLLYWSQAELDRYLEASQIRERAMERINNVIGTYNDLRLRIFSKYPDVFPEEVFNMETFKWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCEVEAFLDYDRSSQGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVQKEGTNPSDSVELTLSLKKSDKCFKEKLEALRKHQLSGTQCYPIQITGWPLELMAYAYLVVSPPSMQGQFEEMAAAASNKTDIKKNMRYPELEEEALQFILDSCEYSISKYNKFLQESGSLDLDVASPKQLNRRLFLKQLALDLCTSERRILFRTQYILRRQLRDLRSGELRALRIFDGFRNLFK* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00890 497 CDD SET_RBCMT 81 312 IPR044431 GO:0016279|GO:0018022
Pte9g00890 497 SMART set_7 82 304 IPR001214 GO:0005515
Pte9g00890 497 Pfam Rubisco LSMT substrate-binding 331 464 IPR015353 -
Pte9g00890 497 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 65 434 - -
Pte9g00890 497 Gene3D - 317 482 IPR036464 -
Pte9g00890 497 PIRSF RMT_SET 2 494 IPR011192 GO:0009507|GO:0030785
Pte9g00890 497 Gene3D set domain protein methyltransferase, domain 1 37 311 - -
Pte9g00890 497 FunFam Rubisco methyltransferase family protein 317 480 - -
Pte9g00890 497 SUPERFAMILY SET domain 66 314 IPR046341 -
Pte9g00890 497 ProSiteProfiles SET domain profile. 82 298 IPR001214 GO:0005515
Pte9g00890 497 Pfam SET domain 94 298 IPR001214 GO:0005515
Pte9g00890 497 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 50 311 - -
Pte9g00890 497 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 324 494 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00890 Pte-Chr9 29993930 29998281 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte9g00890 SET 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00890 - - qsa:O6P43_014453 846.269