Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00888 ATGGGTTCCAGGAAGGGCGGTGACCCACACTTCGGCGACGGTGCCAGTCCTGGGAAAATTTTTATCGGAGGTTTAGCAAAAGATACCACGTTGGAAACCTTTGTGAAATACTTCGAAAAGTATGGTGAGATAACCGATAAGGTTATTATGAAGGATCGACATACGGGTCGGCCTAGGGGATTCGGTTTCATCACTTACGCAGATCCTGCTGTGGTTGATAAGGTCATTCAAGAAGACCATATCATTAGTGGGAAGCAGGTTGAGATCAAAAGGACCATCCCAAAAGGTTCTGGACAAACTAATGACTTCAAGACAAAGAAAATCTTTGTGGGTGGTATACCTACCAATATGACTGAAGAGGAGTTCAAGGCCTTCTTCTCAGAATATGGGAAGGTAACTGAACATGAGATTATTCGTGATCATGCTACTAAGCGGTCTAGGGGGTTTGGGTTCATTGTATTCGACAGTGAAAAAGTTGTTGATAATTTGCTGGAGAATGGAAATATGATTGACATGGCTGGTACACGGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCAGCACTTCCTCCATATGGTAGTGAATCTAGGGCACGCCCATACAATGATGGGTTTGGTGGATATGGTGATTCCTATAGCAGTTTTGCCAGTGGTTTTGGTCCTACCTCTTATAGGTCACTTGCTGGTTATGGTGGTAGGTTTGGTGATTATGGTGGGTATGGTGGTGCTGATGAATTTAGTGGTAGTTTTGGAGGTTACGGTAGTGGTGGTTATGGTGGATACCGTGGAGATTCATCATTTGGCTACTCTAGTCGCTATGGTTCCTACATGGGTGGGCTTGGTGGTGGATATGGTGGCAGCGGGTTAGGAGCATATGGGCGCGGAGTTGGGGCCTATGGAAGCTATGGTGGTTCTGGCCCCAGTACTGGTTATGATTCTGGCATCGGTGGTGCTTATGGTGGAGGAGGATTGTATGGTAGTAGGGCAGGTTATGGTGGCAATAGCCGTTACCATCCTTATGCAAGATAG 1038 0.4624 MGSRKGGDPHFGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDKVIMKDRHTGRPRGFGFITYADPAVVDKVIQEDHIISGKQVEIKRTIPKGSGQTNDFKTKKIFVGGIPTNMTEEEFKAFFSEYGKVTEHEIIRDHATKRSRGFGFIVFDSEKVVDNLLENGNMIDMAGTRVEIKKAEPKKASNPALPPYGSESRARPYNDGFGGYGDSYSSFASGFGPTSYRSLAGYGGRFGDYGGYGGADEFSGSFGGYGSGGYGGYRGDSSFGYSSRYGSYMGGLGGGYGGSGLGAYGRGVGAYGSYGGSGPSTGYDSGIGGAYGGGGLYGSRAGYGGNSRYHPYAR* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00888 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Pte9g00888 345 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pte9g00888 345 SMART rrm1_1 19 90 IPR000504 GO:0003723
Pte9g00888 345 SUPERFAMILY RNA-binding domain, RBD 102 214 IPR035979 GO:0003676
Pte9g00888 345 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 345 - -
Pte9g00888 345 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Pte9g00888 345 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 222 - -
Pte9g00888 345 Gene3D - 97 217 IPR012677 -
Pte9g00888 345 SUPERFAMILY RNA-binding domain, RBD 16 98 IPR035979 GO:0003676
Pte9g00888 345 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pte9g00888 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 78 IPR000504 GO:0003723
Pte9g00888 345 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 170 IPR000504 GO:0003723
Pte9g00888 345 Gene3D - 18 96 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00888 Pte-Chr9 29981089 29983263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00888 18 172 Eukaryotic Initiation Factors Gene Family AT1G71770 24.540 6.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00888 K12741 - gmx:100801373 397.897