Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00886 ATGGGTCTCGGGTACAAGGGCTTTCACAGTTGGGGAGGTCTCAGGAGGGAAACTGCAGAATGTCTCGAGAGTTCTGGAGTTCGACTTGAAGGGGAGACTGTTCGACAACGGCACGGGGAAGCTGCTTGGCAATGGAAGGAGGTATGGGGAAGGTCTGGGTATCGGGCTCAGGGGGTGAAATGCAGAATGAAATGCAAGTGTCGGGGAAAGTTGGGGAGGTCTCAGTGTCGTGAAGTAGAAGCCATGGGGGATGAAGAAGACAGTGTAGAAGCAGAAGCAGAACCCATCGAGCAAAGATTGGAAGATATAGAAATTGGGAAATGGAACCCAAGTGGGAAACAATCCCAGATGATACAGCAATTATCAGACAGGCTCATCAATGGCGACCTTCAATCCAAAATCCAAGCTGCAAGAGAAATCAGAAAACTTGTCCGCAAATCTTCTTCTTCCACGAAAACCCGTACCCATTTAGCGGCTGCTGGTGTCATTCAACCCCTAGTCTTCATGCTCTTCTCTCCTAACCTTGAAGCCCGTGAAGCTTCTCTTCTTGCACTTCTCAATCTAGCTGTGCGCAACGAGCGAAACAAGGTGAAGATAGTGACAGCTGGTGCCATCCCTCCCCTCGTGGAGCTTCTCAAGGTGCAGAGCAGCATGAGGGAATTAGCTACAGCAGCAATTTTAACACTTTCAGCTGCTTCCACTAACAAGGCCACTATTACTGCATCTGGAGCAGCACCTCTCCTAATCCAGATCCTCAACTCTGGATCTCTTCAAGGCAGAGTTGATGCTGTTACAGCTCTACATAACCTTTCCACCTGCCCGGAGAATTCCACTCTGGTTTTAGATGCTAGAGCTGTTCCTCCTCTCATCCACCTCCTCAGAGAATGCAAGAAGCACTCCAAGTTTGCTGAAAAAGCTACAGCACTGCTCGAAATCCTTTCCAACACTGAAGAGGGACGAATTTCCATCTCTAATGCTGACAATGGAATATTAACCATAGTGGAAACTGTTGAAGATGGATCTCTTGTCAGCACAGAGCATGCAGTTGGAACTTTACTCTCTCTATGTCTGAGCTGCCGAGATAAATACCGGAAGTTAATTCTTAATGAAGGTGCAATTCCAGGTCTGTTGCGTCTAACCGTGGAGGGCACTGCTGTTGCTAGGGATAGAGCTCATGCACTGCTTGATTTGCTCAGAGAATCTCCCCCAGAAAAGAGAATGTCATCTGCAGCCATGGAGAGAATTGTCTATGACATTGCTGCACGAGTAGATGGAGTAGATAAAGCTGCTGAAACTGCCAAACGTTTATTGGAAGACATGGTTCAAAGAAGTGCAAATCACGGCATAAACTCTGTACAGAATGGGTCTGCCTGTCATCCGCCAACTTCTGAACAAACATCTACTTTGTAG 1410 0.4752 MGLGYKGFHSWGGLRRETAECLESSGVRLEGETVRQRHGEAAWQWKEVWGRSGYRAQGVKCRMKCKCRGKLGRSQCREVEAMGDEEDSVEAEAEPIEQRLEDIEIGKWNPSGKQSQMIQQLSDRLINGDLQSKIQAAREIRKLVRKSSSSTKTRTHLAAAGVIQPLVFMLFSPNLEAREASLLALLNLAVRNERNKVKIVTAGAIPPLVELLKVQSSMRELATAAILTLSAASTNKATITASGAAPLLIQILNSGSLQGRVDAVTALHNLSTCPENSTLVLDARAVPPLIHLLRECKKHSKFAEKATALLEILSNTEEGRISISNADNGILTIVETVEDGSLVSTEHAVGTLLSLCLSCRDKYRKLILNEGAIPGLLRLTVEGTAVARDRAHALLDLLRESPPEKRMSSAAMERIVYDIAARVDGVDKAAETAKRLLEDMVQRSANHGINSVQNGSACHPPTSEQTSTL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00886 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Pte9g00886 469 SMART arm_5 150 190 IPR000225 GO:0005515
Pte9g00886 469 SMART arm_5 191 231 IPR000225 GO:0005515
Pte9g00886 469 SMART arm_5 273 315 IPR000225 GO:0005515
Pte9g00886 469 SMART arm_5 232 272 IPR000225 GO:0005515
Pte9g00886 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 161 203 IPR000225 GO:0005515
Pte9g00886 469 FunFam U-box domain-containing protein 4 102 458 - -
Pte9g00886 469 Gene3D - 104 458 IPR011989 -
Pte9g00886 469 PANTHER U BOX DOMAIN-CONTAINING 87 402 - -
Pte9g00886 469 SUPERFAMILY ARM repeat 118 404 IPR016024 -
Pte9g00886 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 203 244 IPR000225 GO:0005515
Pte9g00886 469 MobiDBLite consensus disorder prediction 448 469 - -
Pte9g00886 469 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 328 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00886 Pte-Chr9 29963039 29967797 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00886 120 399 U-box Gene Family AT3G54790 37.943 7.23e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00886 K08332 - qsu:112003922 500.36