Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00881 ATGGGTCTTTCGAGTCTTCCAGCACCATCTGAAGGTGTCCTTTGTATAATCCTGGTAAACACTGCCCTTTCTATTTCCATTTTTAAAGGCCTTGTCCGATCAATTCTTCACGTCGTCGGCATCCATCTCTCGACTTCATCGCCAGTATCACCCTCATCCGATGTATCTCCAAACCCACCAGATGCATTCGAATTCCATCTAACCCCATCTAATACTTACATCGAAGAATTCAAAAGTCGGACACCGGCCATTCGATTCAATTCAGTTCCTCGCTGTAAATTGCTAGACCATGACTGCTCAGTCTGCTTGACACCTTTTAAACCAGAGTCCGAAATCAACAGGTTAGCTTGTGGACATCTATTCCACAAGGTGTGCTTGGAGGGGTGGTTAGACTATTGGAACATCACTTGTCCACTTTGCAGGAAACCCTTGATGCCTGAAGAAGAAGCTACCTGCTTGTGGTGA 465 0.4559 MGLSSLPAPSEGVLCIILVNTALSISIFKGLVRSILHVVGIHLSTSSPVSPSSDVSPNPPDAFEFHLTPSNTYIEEFKSRTPAIRFNSVPRCKLLDHDCSVCLTPFKPESEINRLACGHLFHKVCLEGWLDYWNITCPLCRKPLMPEEEATCLW* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00881 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Pte9g00881 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 146 IPR013083 -
Pte9g00881 154 SUPERFAMILY RING/U-box 98 146 - -
Pte9g00881 154 PANTHER - 1 151 IPR044249 -
Pte9g00881 154 SMART ring_2 99 140 IPR001841 -
Pte9g00881 154 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00881 Pte-Chr9 29797213 29798949 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00881 1 148 C3H Transcription Factor Family AT2G04240 60.390 2.90e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00881 K16285 - cave:132183239 244.588