Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00880 ATGGGTTATATGTGTGATTTTTGTGGGGATCAGAGGTCCACAGTTTTCTGCCGATCTGATGCTGCCTGCTTGTGTCTCTCGTGTGATAGAAATGTTCACTCAGCTAATGCACTTTCTAGGCGTCACTCTAGGACACTTTTATGTGGAAGATGTAATTCAGAACCTGCATCTGTAAGGTGTTTGGAAGAGAGGATTTCACTTTGTAAAAATTGCGATTGGTTGTCTCATGTCTCTAACGTGTCAACTGCACCTCATAAAAGACAATCAATCAATAGTTACTCTGGATGCCCTTCAGCTTCAGAACTTTCTAGCATTTGGTCTTTTGCATTAGAATCACAATCCAGCGGCACTGGTGGTGAAGCTGCTGCTGCTGCTGCTGGCAATTCTACATGTGAGCCGAATCTCAGTTTGATGAACATCAATGTCAATAGTACTGGTGCTTTTGCAGCTCCTGTGAGCAACATTAATCGAACTATGACTGGGTCAAGTAATGTACGTAATGCAATCAGCTTAGATAAGTCAAAACCTTGGGCTGGATTATCTTCGGTTCCTGAGTCGAGCTCAAGGACTCGAGTTCTAAACTTGCCAGCTGGAACAATTAATGCATCTTTTCCCAAGTCATATTGTACCAATGCAAAAGCTCCTGAGCTATGTGAAGATGACCTCTACAAGGATCTCAATATGGATGAAGTAGATTTGACTCTTGAGAACTATGATGAACTATTTGGTATGACTCTAAGTAATTCTGAAGACTTTTTTGAGAATGGTGGCATTGATAGTTTGTTTGGGACAGAGGATATATCTGCTGCAAATTCCAATGGTCAAGGTCCTGTTGCTGCCGAGGGATCATCGGTTGGACTAGTTAATGAGATGCAACCTGCATGCAATACTGCAGCGTCGGCAGATTCTTTAATGAGTGCCAAGACAGAGCCAACTATTTGTTTCTCTGCAAGGCAGGGACATTCAAGCGTGTCCTTCCCTGGCATTGCAGGAGAGGGTATTGCAGATTATCAAGACTGTGGAGCTTCTTCAGTGTTTCTCTCGGCAGAACCTCCTTGGTGTTCTCCTTGCCCTGAAAGTTCTTTGCAATCAGCTAACCGTACTAATGCCGTAATGCGTTACAAGGAAAAGAAGAAGTCACGCAAGTTTGAGAAGAAAGTGAGATATGCGTCTCGCAAAGCAAGAGCTGATGTAAGAAGGCGTGTGAAGGGCCGGTTTATCAAAGCTGGCGATGCCTATGATTATGACCCTTTGAATCAAACTAGAAGCTGCTGA 1275 0.4353 MGYMCDFCGDQRSTVFCRSDAACLCLSCDRNVHSANALSRRHSRTLLCGRCNSEPASVRCLEERISLCKNCDWLSHVSNVSTAPHKRQSINSYSGCPSASELSSIWSFALESQSSGTGGEAAAAAAGNSTCEPNLSLMNINVNSTGAFAAPVSNINRTMTGSSNVRNAISLDKSKPWAGLSSVPESSSRTRVLNLPAGTINASFPKSYCTNAKAPELCEDDLYKDLNMDEVDLTLENYDELFGMTLSNSEDFFENGGIDSLFGTEDISAANSNGQGPVAAEGSSVGLVNEMQPACNTAASADSLMSAKTEPTICFSARQGHSSVSFPGIAGEGIADYQDCGASSVFLSAEPPWCSPCPESSLQSANRTNAVMRYKEKKKSRKFEKKVRYASRKARADVRRRVKGRFIKAGDAYDYDPLNQTRSC* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00880 424 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte9g00880 424 SMART bboxneu5 48 90 IPR000315 GO:0008270
Pte9g00880 424 CDD Bbox1_BBX-like 5 47 - -
Pte9g00880 424 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte9g00880 424 CDD Bbox1_BBX-like 47 90 - -
Pte9g00880 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 412 - -
Pte9g00880 424 Pfam CCT motif 367 409 IPR010402 GO:0005515
Pte9g00880 424 ProSiteProfiles CCT domain profile. 367 409 IPR010402 GO:0005515
Pte9g00880 424 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00880 Pte-Chr9 29775754 29781798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00880 1 423 C2C2-CO-like Transcription Factor Family AT3G07650 51.945 1.38e-141 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte9g00880 CCT 7.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00880 - - tcc:18612516 546.584