Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00869 ATGGTGAAGTTTATGAAACAAAACAAGGCAGTGATCGTACTGCAAGGTCGCTATGCCGGTCGGAAGGCTGTGATCGTTCGCACATTCGATGAGGGAACACGCGACCGTCCTTACGGTCACTGCTTGGTTGCCGGTATCAAGAAGTACCCTAGCAAGGTGATCAAGAAGGACTCCCTGAAGAAGCAAGCCAAGAAGTCTCGCGTCAAGGCTTTCATCAAGCTCGTGAACTACGGCCACCTCATGCCCACTCGTTACACGCTCGATGTGGATCTGAAGGATACGGTTACCGCGGATTGTCTGCAGTCGAAGGATAAAAAAGTGGCCGCTTTGAAAGAGACCAAGAAGAAGTTCGAGGAGAGGTTCAAGACCGGGAAGAATCGTTGGTTTTTCACCAAGCTCCGGTTCTGA 408 0.5074 MVKFMKQNKAVIVLQGRYAGRKAVIVRTFDEGTRDRPYGHCLVAGIKKYPSKVIKKDSLKKQAKKSRVKAFIKLVNYGHLMPTRYTLDVDLKDTVTADCLQSKDKKVAALKETKKKFEERFKTGKNRWFFTKLRF* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00869 135 ProSitePatterns Ribosomal protein L27e signature. 124 135 IPR018262 GO:0003735|GO:0005840|GO:0006412
Pte9g00869 135 Coils Coil 100 120 - -
Pte9g00869 135 Gene3D - 1 135 IPR038655 -
Pte9g00869 135 SUPERFAMILY Translation proteins SH3-like domain 3 135 IPR008991 -
Pte9g00869 135 Pfam Ribosomal L27e protein family 52 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Pte9g00869 135 CDD KOW_RPL27 6 88 IPR041991 -
Pte9g00869 135 PANTHER 60S RIBOSOMAL PROTEIN L27 1 135 IPR001141 GO:0003735|GO:0005840|GO:0006412
Pte9g00869 135 FunFam 60S ribosomal protein L27 1 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00869 Pte-Chr9 29223449 29223856 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00869 1 136 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 81.618 4.71e-79 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00869 K02901 - csav:115714234 223.787