Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00861 ATGGAAAATCCCAATGCTGAACAACATCGTCATCAACAAGAAGAAGAAGATCCACATTTCGCATCAGATCCAACTGCTTCAGCTCCTGCTCACCTTTATCAAGCGCAGGAATGTGTTGAAAAGGAAAGTGATCATGAGGCCTTCTTGATTCCAAAGTCAAGGCCGAGAAAACCAGACCTTTCATGTTTAAAAATTCCACCAAGGACACTGGAAAGGGCACAGACCACCATAGATGTTTTGACAACTCCTTGTTCTGCTAGAGGGGTACTACCTGCAATGCCAAATTCAGCCAAGATACAGAAAAAAGAAGTTAAGCGTCACATGACTCGATCCTTTTCGGTGCCTGATAAAGTCAAAACTGCTGTGAAGAATACAGTTTCTGGTGGTATGTTTCGTGTGATTGCCACACCTCGTGCTGTAGATGTCAATGCTGCTTCAACTGATAACGGTCCAACACCAGAAATCGAAAAAGTAGATCTTGGGGAGGATATTCCTGAGGAGGAAGCTGTTTGTAGGATTTGTTTATTGGAGCTCACAGAAGGAGGGGAAACACTCAAGATGGAGTGCAGCTGTAAAGGTGAGCTTGCACTGGCTCACAAAGAATGTGCAGTGAAATGGTTTAGTATCAAAGGAAATAGGATATGTGAAATTTGCAAACAACAAGTCCACAATCTTCCAGTGACCCTGTTGAAAATTAATAATCCTCAATTTAGAAGACACTCAAGTATGTCACAACGGAGAGCTTCTCCGCCATACAGGATTTGGCAAGATGTCCCCGTGCTTATTTTAGTTAGCACACTAGCTTATTTCTGCTTTCTAGAGCAGCTTCTGGTAACCGATTTGGGCAGTCGTGCTCTTGTCATTACTTTGCCTTTCTCCTGCCTCATAGGTTTCGCTTCATCCTTTATTGCTACTACTATGGTGAGCAGGAGCTACCTGTGGTTTTATGCTACCTTTCAGTTTGTAATGATCGTCGTGTTTGCTCATGTATTTTATACTTTGCTTCATATAAATTCTATCCTCTCCGTTGTTCTTTCTTCATTCACTGGTTTTGGGATCTCAATCAGCATAAATTCTATGTTCATTGAGTTCCGCCGATGGAGAACGAACAGGCAGATTCAGTCTTTTGATGGAAATGCAAACCAGGCTCAGCAGCAACAGCAGGAGGAGGAGACGCAATTACAGCAAGTAACTGCAATTGCATGA 1206 0.427 MENPNAEQHRHQQEEEDPHFASDPTASAPAHLYQAQECVEKESDHEAFLIPKSRPRKPDLSCLKIPPRTLERAQTTIDVLTTPCSARGVLPAMPNSAKIQKKEVKRHMTRSFSVPDKVKTAVKNTVSGGMFRVIATPRAVDVNAASTDNGPTPEIEKVDLGEDIPEEEAVCRICLLELTEGGETLKMECSCKGELALAHKECAVKWFSIKGNRICEICKQQVHNLPVTLLKINNPQFRRHSSMSQRRASPPYRIWQDVPVLILVSTLAYFCFLEQLLVTDLGSRALVITLPFSCLIGFASSFIATTMVSRSYLWFYATFQFVMIVVFAHVFYTLLHINSILSVVLSSFTGFGISISINSMFIEFRRWRTNRQIQSFDGNANQAQQQQQEEETQLQQVTAIA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00861 401 MobiDBLite consensus disorder prediction 1 21 - -
Pte9g00861 401 ProSiteProfiles Zinc finger RING-CH-type profile. 163 225 IPR011016 GO:0008270
Pte9g00861 401 Pfam RING-variant domain 171 218 IPR011016 GO:0008270
Pte9g00861 401 SMART ringv_2 170 219 IPR011016 GO:0008270
Pte9g00861 401 CDD RING_CH-C4HC3_MARCH 171 219 - -
Pte9g00861 401 Coils Coil 373 400 - -
Pte9g00861 401 PANTHER OS02G0165000 PROTEIN 82 388 - -
Pte9g00861 401 SUPERFAMILY RING/U-box 167 222 - -
Pte9g00861 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 226 IPR013083 -
Pte9g00861 401 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00861 Pte-Chr9 29008689 29022763 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00861 165 226 C3H Transcription Factor Family AT2G37950 47.619 5.76e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00861 - - qsa:O6P43_014398 382.489