Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00853 ATGGGGAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACTACTAACCGCCAAGTTACCTTCTGTAAACGAAGGAATGGGCTGCTGAAGAAAGCTTATGAACTATCAGTTCTCTGTGATGCAGAAGTGGCTCTCATTGTCTTCTCTAGCCGTGGCCGTCTATATGAGTACTCTAACAACAACATAAGATCAACCATAGAGAGGTACAAGAAGGCATGTCCAGATGGATCAAGCACCAGCTCTGTGACTGAAATGAATACCCAGTTCTATCAGCAAGAGTCAGCAAAGTTGAGGCAGCAAATACAAATGCTGCAAAACTCTAACAGTAACTTGATGGGGGATTCCTTGAGTAACTTGAGTGTGAAGGAACTGAAGCAGCTGGAAAATAGGCTTGAGAGAGGAATCGCTAGAATCAGGTCCAAGAAGCATGAGATGTTGCTGGCAGAGATTGAGTATTTGCAGAAAAGGGAAATGGAACTGGAAAACGATAATCTTTGCCTTCGGACGAAGATAGCAGACATTGAGAGGTTTCATCATGCAAATATGGTTTCTGGACAAGAACTCAATGCCATTCAGGCATTAGCTTCTCGCAATTTCTTTAGCCAAGCTATGATTGATGATGGGGGTGCCTATCCACAGCCAGACAAGAAGATTCTACATCTCGGAGCTCTTCTAGCCAAGCAACTCAATCGAAGAAGCCACCCATATTACAAAGCACCCTCGCGTCTTCCCCATATTGCTCTAGCGAAGCAACCCAAGCCACCCATGGCTTAG 774 0.4483 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACPDGSSTSSVTEMNTQFYQQESAKLRQQIQMLQNSNSNLMGDSLSNLSVKELKQLENRLERGIARIRSKKHEMLLAEIEYLQKREMELENDNLCLRTKIADIERFHHANMVSGQELNAIQALASRNFFSQAMIDDGGAYPQPDKKILHLGALLAKQLNRRSHPYYKAPSRLPHIALAKQPKPPMA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00853 257 Coils Coil 121 163 - -
Pte9g00853 257 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte9g00853 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
Pte9g00853 257 Coils Coil 87 107 - -
Pte9g00853 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Pte9g00853 257 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pte9g00853 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte9g00853 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Pte9g00853 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte9g00853 257 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00853 Pte-Chr9 28482528 28488654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00853 1 222 MADS-box Gene Family AT4G09960 74.783 6.10e-123 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte9g00853 K-box 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00853 K09264 - zju:107421424 375.555