Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00849 ATGGGTGAGAATAGCCGACATGCTAACAAGTGGACGTTGCATGAGTACTGGGCAAGCGAACAAAAACTGATCGAAGGTGCTTTTAAGTTGGGTTTGGCACCTGCTTTCAATCTCCGACAGGCCATGCCCGACCGCTATTCTTCAGGCTGCACCGTTTATATTGGAAATCTAGATGAGAAGGTGACGGAGAGAGTCTTGTATGATATTTTAATTCAGGTAGGACAAGTGGTAGATCTTCACATGCCCAGAGACAAGGAAACTGGAAAACCAAAAGGTTTTGCTTTTGCTGAATATGAAACTGAAGAGATTGCAGATTATGCAGTCAAACTTTTCTCAGGTCTCGTGACAATTTACAACAGGACATTGAGGTTTGCGTTTCCTTCTCGTGTAAATAGTCAGTCTAATCGCTGTGGATCACATTATGGTGGCAACAATTATGATTACAGCTGTTCAGTATATGGGGCAGCCTCGGATAGATTTAGCCAACCTAGGTCCCGACAATTTTGA 507 0.4339 MGENSRHANKWTLHEYWASEQKLIEGAFKLGLAPAFNLRQAMPDRYSSGCTVYIGNLDEKVTERVLYDILIQVGQVVDLHMPRDKETGKPKGFAFAEYETEEIADYAVKLFSGLVTIYNRTLRFAFPSRVNSQSNRCGSHYGGNNYDYSCSVYGAASDRFSQPRSRQF* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00849 168 SMART rrm1_1 51 125 IPR000504 GO:0003723
Pte9g00849 168 SUPERFAMILY RNA-binding domain, RBD 42 149 IPR035979 GO:0003676
Pte9g00849 168 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 123 IPR000504 GO:0003723
Pte9g00849 168 Gene3D - 37 162 IPR012677 -
Pte9g00849 168 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 129 IPR000504 GO:0003723
Pte9g00849 168 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 47 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00849 Pte-Chr9 28453091 28456525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00849 45 115 Eukaryotic Initiation Factors Gene Family AT4G34110 30.986 6.18e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00849 K12831 - vvi:100252755 155.992