Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00817 ATGCAGAGCCGCGCAGGAGATGGAGAGGCGGTAGACTTCGAGCCGGAGGACGATGATTTGATGGATGAGGACGCCGGAGCTGAAGCCGATGCCTCCGCGTCTCCTCGAGGAAACGGTTCGCATGCTCTACCTAAACTCAAGTCCGCCATTACTGGTGGTCCTTCGTCTTCTCTCTCTGGGCCTAAGAAGACAAAAGGTCGTGGATTCCGTCAGGATACTGATGTCGACGGCAATACTCGCCTTGCTGGTTCTGATTTCGACTCTCTCAAGTCCTCTGATGGAATCGGCCCTCAAAGATCAATTGAAGGATGGATTATCTTAGTAACGGGGGTTCACGAGGAAGCACAGGAGGACGATCTACACCAGGCTTTTGGTGAATTTGGGGAAATAAAAAACTTGCATCTGAATCTGGACCGTCGCACTGGATTTGTCAAGGGTTATGCATTGATTGAATATGGCACCTTTGAAGAAGCACAGCGTGCAATATCCGAAATGAATGAAGCTGAACTGCTTACACAAACTATCTATGTTGATTGGGCTTTCAGTAATGGACCTTCTGTCAATGGATCCATGAAGAGAAAGAATCCAAGATCCCATCGAGAACGTCGCTCAAGGAGCCCTTGGAGAAGACACTGA 636 0.4906 MQSRAGDGEAVDFEPEDDDLMDEDAGAEADASASPRGNGSHALPKLKSAITGGPSSSLSGPKKTKGRGFRQDTDVDGNTRLAGSDFDSLKSSDGIGPQRSIEGWIILVTGVHEEAQEDDLHQAFGEFGEIKNLHLNLDRRTGFVKGYALIEYGTFEEAQRAISEMNEAELLTQTIYVDWAFSNGPSVNGSMKRKNPRSHRERRSRSPWRRH* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00817 211 MobiDBLite consensus disorder prediction 187 211 - -
Pte9g00817 211 MobiDBLite consensus disorder prediction 193 211 - -
Pte9g00817 211 SMART rrm1_1 105 178 IPR000504 GO:0003723
Pte9g00817 211 MobiDBLite consensus disorder prediction 11 26 - -
Pte9g00817 211 PRINTS RNA binding motif protein 8 family signature 169 181 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Pte9g00817 211 PRINTS RNA binding motif protein 8 family signature 58 70 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Pte9g00817 211 PRINTS RNA binding motif protein 8 family signature 95 109 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Pte9g00817 211 PRINTS RNA binding motif protein 8 family signature 151 167 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Pte9g00817 211 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 182 IPR000504 GO:0003723
Pte9g00817 211 Gene3D - 53 195 IPR012677 -
Pte9g00817 211 PANTHER RNA-BINDING PROTEIN 8A 7 206 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Pte9g00817 211 FunFam RNA-binding protein 8A 47 195 - -
Pte9g00817 211 SUPERFAMILY RNA-binding domain, RBD 97 207 IPR035979 GO:0003676
Pte9g00817 211 CDD RRM_RBM8 98 185 IPR033744 GO:0003729
Pte9g00817 211 MobiDBLite consensus disorder prediction 1 94 - -
Pte9g00817 211 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 175 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00817 106 180 Eukaryotic Initiation Factors Gene Family AT3G11400 30.667 1.13e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00817 K12876 - qsa:O6P43_020261 279.641