Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00791 ATGCAGTCGAAGTCTGGTAGTTCAAACCATCTTAGACCTGACCAGAATTCAATTCCAGCTACCAATGTCTATTCTGAACCTTGGTGGCGAACTGTTGGGTACAATCCCATTTCCCCAGTCGTCATGACAGCTGCAAATGGATCCAACTCATCCTCATTGGAATGCCCAAATGGTGATTCAGAATCAAATGATGGTCAGTCTTTGTCCAACAGTGGGTTAAATGAGGAAGATGATGATGCCACTAAAGAATTACAGGGCACTGCATCTACTAAGACAGGGAAAGTTGGCCAAGAACGCGAAGCAGTGCAAAATGTCTCAACAACTGCACCTTCAATGCATGACGAAGCTCTTACACAAACTCCACATCTTGAACTTGTGGGACACTCAATTGCATGTGCTTCAAATCCTTATCAGGATCCATTTTATGGGGGGATGATTGCAACTTATGGACCTCAGCAGCTGGGATATCCTCCTTTTATTGGGATGCCTCATGCCAGGATGGCTTTACCCCTTGAGATGGCACAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGGCGAAGACAGGCACGGGCGAAAGCGGAGCTTGAAAAAAAGCTGATTAAAGTCAGAAAGCCTTACCTTCACGAATCAAGGCATCAGCATGCAATGAGAAGGGCCAGAGGTACTGGAGGACGTTTTGCAAAGAAAACTAAAGGTGAGAATGCAGATGAAAATCCAACAGAAAAGGGCAAAGGTTCAGTGCTCAGCAAGATAGAAGAGTTTCTCGACTGCATGGAAAATATGATTCAAAGAATTATCCAAATGATAACAGCAGCCCCTACCATAATCACAGTGCTTTTCAAGCTTCAACTTATCATCTACACCAAGGTGAACGAGTGGAAGAAGGAGACTGTTCAGTGCAGCAAAGGGGAAGCATCTCATGTGAGCAGTCTTCACAGAGGCGTCTTACTATCCAGTAGTCATATCGTGCATGGGGTTCAGACGCTGAGTGGAGATCTGGTTTGCACCCAGGAAAACTATTTAGTGGGCTCAAGTCGAAACGGACAGCATGGATATTTAGATGATCAAACACTTTGTGTACTCTGGTTTCTCCTATCTTTAATGGGTTTGATGGGTGCTCAACTGAACGTTTAA 1149 0.4447 MQSKSGSSNHLRPDQNSIPATNVYSEPWWRTVGYNPISPVVMTAANGSNSSSLECPNGDSESNDGQSLSNSGLNEEDDDATKELQGTASTKTGKVGQEREAVQNVSTTAPSMHDEALTQTPHLELVGHSIACASNPYQDPFYGGMIATYGPQQLGYPPFIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGTGGRFAKKTKGENADENPTEKGKGSVLSKIEEFLDCMENMIQRIIQMITAAPTIITVLFKLQLIIYTKVNEWKKETVQCSKGEASHVSSLHRGVLLSSSHIVHGVQTLSGDLVCTQENYLVGSSRNGQHGYLDDQTLCVLWFLLSLMGLMGAQLNV* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00791 382 MobiDBLite consensus disorder prediction 215 249 - -
Pte9g00791 382 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 25 263 IPR001289 GO:0003700|GO:0006355
Pte9g00791 382 MobiDBLite consensus disorder prediction 215 230 - -
Pte9g00791 382 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Pte9g00791 382 MobiDBLite consensus disorder prediction 85 113 - -
Pte9g00791 382 MobiDBLite consensus disorder prediction 41 74 - -
Pte9g00791 382 MobiDBLite consensus disorder prediction 1 24 - -
Pte9g00791 382 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Pte9g00791 382 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Pte9g00791 382 Gene3D - 174 236 - -
Pte9g00791 382 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Pte9g00791 382 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Pte9g00791 382 MobiDBLite consensus disorder prediction 231 245 - -
Pte9g00791 382 MobiDBLite consensus disorder prediction 1 25 - -
Pte9g00791 382 MobiDBLite consensus disorder prediction 40 113 - -
Pte9g00791 382 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00791 Pte-Chr9 25622526 25625382 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00791 1 259 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.515 1.04e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte9g00791 CBFB_NFYA 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00791 K08064 - qsa:O6P43_013957 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00791 9 25622526 25625382 Pte9g00791 9 25622526 25625382 RCT