Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00785 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCACCACTGGACCCTGCAGCATTTTCGGATGCAGTGATCCAGATTTATTTAGATAATGCTGGTGATCTGGAACTTGTTGCTAAGAGTGCCGAATCTTCAGACCTTAACTTCTCAAGATATGGTGACACTTTCTTTGAGGTTGTTTTCACTGGGGGCCGTACACAACCTGGCACTACCAAGCCTGATGAAGGGGAGCGCCATCCCTATTCAATTATAGACTGTGAGCCAAAACGTGAAGCCATTTTACCATATGTGATGTTTATACAAAAAATTTTGCGCAGGAGGCCATTCCTTATAAAAAATCTTGAAAATGTCATGCAAAGATTTCTGCAGTCCTTGGAACTCTTTGAAGAAAATGAGAGGAAAAAGTTGGCAATCTTCACAGCTCTTGCTTTTTCACAGAAGCTGTCTGGACTTCCGCCAGAGACTGTCTTCCAGCCACTTCTTAAGGATAATCTTGTTGCCAAAGGGCTAGTTCTAGCTTTCATAACTGACTTCTTTAAGGAGTATCTAGTTGATAATAGCCTTGATGATCTCATTTCAATTCTGAAACGGGGAAAGGTGGAGGATAATCTGTTGGATTTCTTCCCAACTGCAAAGCGGTCTGCTGAAGCATTCTCTGAGCATTTTACCAAGGAAGGTCTCTTGGCATTGGTTGAGTACAATGAAAAGAAAATCTTTGAAGTGAAGCTGAAGGAGATGAAATCTGCCTTAACAATCCAAATCACAGAGGAGGCTGATATAGCTGAAGTTATTGAAACAGTAAAGCAACGTGTTAAAGATGCAAATCTGCCAGATATTGAGGTTGTGAGGGTTACATGGGATGTTCTGATGGATGCTGTTCAATGGTCTGGAAAAAACCAGCAACAGAATGCTAATGCTGCTTTGCGCCAGGTGAAAACTTGGGCAGAGCTATTGAATACTTTCTGTACTACTGGAAGGCTTGAGCTAGAACTCATATACAAAGTACAGATGCAATGCTATGAGGATGCTAAGTTGATGAAGCTCTTTCCCGAGATTGTTAGGTCTCTCTATGATCAGGATGTGCTTGCAGAGGACACAATCCTCCACTGGTTCCGCAAGGGAACCAATCCCAAGGGCAGGCAAACTTTTGTCAAGGCACTGGAACCATTTGTGAATTGGCTGGAGGAGGCGGAAGAGGAAGAGTAA 1236 0.4345 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVIQIYLDNAGDLELVAKSAESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIDCEPKREAILPYVMFIQKILRRRPFLIKNLENVMQRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLAFITDFFKEYLVDNSLDDLISILKRGKVEDNLLDFFPTAKRSAEAFSEHFTKEGLLALVEYNEKKIFEVKLKEMKSALTIQITEEADIAEVIETVKQRVKDANLPDIEVVRVTWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNTFCTTGRLELELIYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNPKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00785 411 SMART 542_3 325 410 IPR003307 GO:0005515
Pte9g00785 411 Coils Coil 121 141 - -
Pte9g00785 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Pte9g00785 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Pte9g00785 411 SUPERFAMILY ARM repeat 255 408 IPR016024 -
Pte9g00785 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Pte9g00785 411 Gene3D - 243 411 - -
Pte9g00785 411 FunFam ARM repeat superfamily protein 243 411 - -
Pte9g00785 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00785 Pte-Chr9 25436869 25442007 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00785 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 32.727 3.34e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00785 - - qsa:O6P43_007765 742.265