Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00641 ATGATGATTTCTTCTGGGATTAATCTGGTGATGACTGTGATTGGATTCGCTGTCAGTACCATGTTCATTGTTTTTGTTTGTACAAGGCTTGTTTGTGCCCGGATTCATTTGAATGCTTCCCGGAGGTCCTTTCTTATTGCTTCCAGATCGGATCTCAGTCTGCTAGAACGGGGTTTACATGGTCTAGAACCAGTAGTTGTTGCCAACTTTCCAACAAAGAAGTATGCTGACGAGTTTTTCTCAGCTGCAGAAGATGCTCAATGTACAGTTTGTCTTTCACAGTACCATGGTGAGGATATACTGCGTATACTTCCATACTGTGGACACTCCTTTCATGTGAACTGTATAGATGTATGGCTACTACAGAACTCTACATGTCCTGTGTGCCGAATATCATTGCGTGAGTTTCCAGATCGAAAACGCTTTCTGCAGCCGTTGTTCAGCTCAGCCATAAGATCGCAATACAATATGGAATCCTTTGATGCCAATTCTTGTAACTATCTGTTGACTGATAATAGACTTCCGTCAACTGCTCATGAAAATCATGGGATGGATGTGCCAACAGAGAATCACCTCACATCTGAACATCGTGAAACAGATATTGCACAGAATGCTGCATCTTTTAGAGAAGGTGATCATCAAATCACCAAGGATACCAGGAACAACCACATAGAAAGTCCCTCAAATCCTCAGGAAGGTGGGGACCTAAGAATGCCTGTGGTTAATGAAATGACAAGGTATGCTTGA 747 0.4244 MMISSGINLVMTVIGFAVSTMFIVFVCTRLVCARIHLNASRRSFLIASRSDLSLLERGLHGLEPVVVANFPTKKYADEFFSAAEDAQCTVCLSQYHGEDILRILPYCGHSFHVNCIDVWLLQNSTCPVCRISLREFPDRKRFLQPLFSSAIRSQYNMESFDANSCNYLLTDNRLPSTAHENHGMDVPTENHLTSEHRETDIAQNAASFREGDHQITKDTRNNHIESPSNPQEGGDLRMPVVNEMTRYA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00641 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Pte9g00641 248 MobiDBLite consensus disorder prediction 205 239 - -
Pte9g00641 248 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Pte9g00641 248 PANTHER OS11G0150450 PROTEIN 2 196 - -
Pte9g00641 248 SMART ring_2 88 129 IPR001841 -
Pte9g00641 248 SUPERFAMILY RING/U-box 80 136 - -
Pte9g00641 248 Pfam Ring finger domain 87 130 IPR001841 -
Pte9g00641 248 CDD RING-H2_EL5-like 87 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00641 Pte-Chr9 10789492 10796771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00641 9 145 C3H Transcription Factor Family AT2G34990 30.986 1.66e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00641 - - cpap:110809188 342.813