Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00619 ATGACGGATTATAAACCACTACAACAGAAGGCTGAATCAACTAATGATGCCCGCATAGAGTTTGAGCGTGGATTGGAGGATCTGATGCAGGGGCATTTGGATGATTGTATGCCATTTGCTTCATGCAGCTCCACACGTACTCAGGATGATGAGGATGATGAAGGGGAGCAGCTGGTCCGGAGGAGAAGAAGGGCTGACCTTGAAGGAGATGATTTGGCTGAGTCATCTGCTGCTAGGCGGCGACATTCACGGATTTTGAGCAGGTGGGCTGCACGGCAAGCACAAGAGATGATTACAACTATCGAGAGGAGGAATCGCGAAACTGAGTTGATGGCACTTGCAGGGTTGCACACAGTTTCCATGCTGGACTCCTCTTTTTTGAGGGGGTCGCAGTCAACGTCAAGTCGGCAAGGTTCTGTTGAGAGGCCCAGCACTCAAGCTTCTGCTATCTTGCAAATGTGGCGGGAATTGGAGGATGAGCATGTCTTGAATCGGGCACGTGAGAGGATGAGGGAAAGACTAAGACAACAAAGGAGTGTTGATGCTAATACCAATACTTCAAATACAAATTTGTCAGATGGTCAGGGGGAGGAAGAATCACCTGATCTTGGTGATGTTGAAAGGGAGAGAGTGAGGCAGATTGTTAGGGGATGGATGGAAAGTGGCATTAGCAATCATTCATCAAATATTACTAGGAGAAGTAATGGTCCTAGGGCAGAATGGCTTGGTGAACCCGAGCGTGAAAGGGTGAGAATTGTTAGGGAGTGGGTGCAAACTGAAAGTCAACAAAGAGGACCTCGTGGTGGTCGGAGAGATGATGACAACAGTGAACGTGGTTCGCAGGCTGAAATAGTGCGTGATGCATTGGTTTCTGGTCATGAAGAAGGCCAACAAGAGCATGTTCGCAGGGACACGTTGAGGTTACGAGGAAGGCAAGCCCTAGTTGATTTGCTTGTGAGAACAGAGAGAGAAAGACAAAGGGAACTTCAGGCTCTGATGGAACACCGAGCTGTCTCTGATTTTGCTCATCGCAATCGCATACAGTCTTTACTTAGAGGTAGGTTCTTGCGGACGGAAAGAACTGTTGAGGAGGAGAGACCTCCTTCAATGGCAGCACATGAGTTAGTTCAATTAAGACAACGAAACACTGTATCTGGCTTGAGGCAAGGGTTTCACTCGAGATTAGAAAACATTGTCCATGATCAAGCAGACAGCCATTCGGATAATGAAGTTGATGATCCAAGGAATTATCAGAACCAAACAAGCAATTTGCAGGGTATCCATGAAGGAAATCAGGATAATGGACAAACCAGGAGTTCTGGACCTGATGTCCAACAGCAATCGGATCAAACTGTATCCTTACAAAGTAACACAACTGCTGAGAATCAGAGTTGGCAGGGATCTGGCCAGGAGCAAACTCGTGAAGATGAGGAAGGAAGGCGGCAGAGAACAACCTATGGTTCATTGAATCGGTTGGGAGACAACAATGCTGAAGATACGACTATAAATTGGCAGCAAAATGTAGCCAGTGATTGGCCTCAGGAAGCTTCTAGAAATGTAAGGGAATATCCACATGCACGAGAACCCCCGGGAGTACGGCGTGAGCATGCCCGAGGTGAGTTAACTGGAAACTGGTCTGAAGGGTCATCTGGTACTTTGAGGACTCGGCGGGGTGTTCATTTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTGTACAGTATGGAACTTCGAGAGCTTTTGAGCAGAAGAAGTGTCTCAAACCTTCTACACAGTGGCTTCCGGGAAAGTCTGGACCAATTGATACAGTCTTATGTTGAAAGGCAAGGTCAGGCGCCCATTGATTGGGATTTGCACAGGAATTTGTCGACAACGGATCCTGCTTCACCACAACAGGACCAAGAAAATGAAAGAGACATGCAGAATGAGGATCAACGTGATGTCATTAACACGCCTTCACTGGTTTTGCCACCACCTCCATTGCCTCCACCACAGCCACTCTGGCACCAGGCCTTACATAACACTGGCTGGTCTCGTCATAGGATGCACCGCTCCGATATCGAATGGGAGATGATTAATGATTTGAGAGCAGATATGACAAGACTTCAGCAGGGCATGAGTCACATGCAGAGGATGTTGGAGTCATGCATGGATATGCAGCTGGAGTTACAACGTGCTGTCAGACAGGAAGTTTCTGCTGCTCTGAACCGAGCAGCTGGTGATAGAGGGTTGGGTGCTGGGACCTCAGAGGATGGATCTAGGTGGGGTCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAATCATATCGATTCACTTCTGTATAGATGCGGGCACATGTGCACTTGCTCAAAATGTGCAAATGAGTTGGTTCGTGGAGGAGGAAAGTGCCCTCTGTGCCGAGCACCGATCATTGAGGTGGTCCGGGCATATTCGGTATTGTAA 2457 0.4758 MTDYKPLQQKAESTNDARIEFERGLEDLMQGHLDDCMPFASCSSTRTQDDEDDEGEQLVRRRRRADLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRETELMALAGLHTVSMLDSSFLRGSQSTSSRQGSVERPSTQASAILQMWRELEDEHVLNRARERMRERLRQQRSVDANTNTSNTNLSDGQGEEESPDLGDVERERVRQIVRGWMESGISNHSSNITRRSNGPRAEWLGEPERERVRIVREWVQTESQQRGPRGGRRDDDNSERGSQAEIVRDALVSGHEEGQQEHVRRDTLRLRGRQALVDLLVRTERERQRELQALMEHRAVSDFAHRNRIQSLLRGRFLRTERTVEEERPPSMAAHELVQLRQRNTVSGLRQGFHSRLENIVHDQADSHSDNEVDDPRNYQNQTSNLQGIHEGNQDNGQTRSSGPDVQQQSDQTVSLQSNTTAENQSWQGSGQEQTREDEEGRRQRTTYGSLNRLGDNNAEDTTINWQQNVASDWPQEASRNVREYPHAREPPGVRREHARGELTGNWSEGSSGTLRTRRGVHFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYVERQGQAPIDWDLHRNLSTTDPASPQQDQENERDMQNEDQRDVINTPSLVLPPPPLPPPQPLWHQALHNTGWSRHRMHRSDIEWEMINDLRADMTRLQQGMSHMQRMLESCMDMQLELQRAVRQEVSAALNRAAGDRGLGAGTSEDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIIEVVRAYSVL* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00619 818 ProSiteProfiles Zinc finger RING-type profile. 766 805 IPR001841 -
Pte9g00619 818 MobiDBLite consensus disorder prediction 173 206 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 179 196 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 53 79 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 623 646 - -
Pte9g00619 818 CDD mRING-HC-C3HC5_NEU1 763 815 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 255 280 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 41 79 - -
Pte9g00619 818 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 111 817 - -
Pte9g00619 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 816 IPR013083 -
Pte9g00619 818 Coils Coil 91 111 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 414 470 - -
Pte9g00619 818 SUPERFAMILY RING/U-box 765 811 - -
Pte9g00619 818 Pfam Zinc finger, C3HC4 type (RING finger) 763 810 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 400 497 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 127 146 - -
Pte9g00619 818 MobiDBLite consensus disorder prediction 265 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00619 Pte-Chr9 10071491 10076554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00619 745 812 C3H Transcription Factor Family AT3G06140 39.130 2.73e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00619 - - cave:132186690 1135.55