Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00613 ATGTCTCAAGATAAATCAAGGTTGAAGACTAGAGACCAAGAATGGTATTTCTTTAGTGCATTGGATCGGAAGTATGGAAATGGAGGAAGAATGAATAGGGCTACAGGCAGAGGGTACTGGAAAGCAACAGGAAATGATCGTCCAGTTCGGCATGAGTCAAGGACAGTCGGTTTGAAGAAAACTTTGGTATTCCACAGTGGCCGAGCCCCAGATGGCAAGCGGACTAACTGGGTCATGCATGAATATAGGCTAGTTGAAGAAGAATTGGAGAGATCTGGGATTGGATCCACACAGGATGCGTACGTTTTGTGTAGGGTATTTCACAAAAATAACATTGGACCACCGAATGGGCAACGGTATGCACCTTTTATCGAGAATGAATGGGATGATACAATAACATTGATACCAGGGAAAGGAACTGCTTTTGAAACTCCTGAAATTGAAAATGGAAAATTTGAAAGCGATGGATATGTTGCTTCAATGGATAATTCTGCTCAGGATAGATCTTCTCTCGATGTTGACCAGCTACCAATAGAAACACGAAATCTTCTTGCTGTTTGCAAGAAAGAGATGGAAGAAAGAGAGATGAAGGAGAGAGAGACTGAGGAGAAAAAGATGGAGGACAAGGGGATGGAGGAATACCCTCCTCACGATGCGGCTAGCTCAAAACCTTTCTCCTTTATTTATAAAAGAAGGCGACAAAATAATCCGAGTTCTACTTACTCTAATCAATCTGATGTCTCAACTAGAACAAGCCAGGATCCTAACTCATCTACAACCACCACAGCTGCGATGCCACTCTCCACAGTAAAAAGGAGTTTCCTTTCTTCTTTGGTGGAGTATTCTTTGATAGAATCCCTTGAACCGAAAGAGAGTCCTGAAGTCCACTTACCTGAGACGGACGCTGCTGATGTTAATTCATTTCCTCCTGGCTGCTTAAAAGTTATCCAAGGGATGAATCAGGAGATTCATAAGCTCTCTGTTGAGAGAGAAACGCAGAGGTTTGAAATGATGAGCGCCCAAGCTATGATTAACATCCTCCAGTCCCGGATCGACCTTTTAAACAAGGAAAATGATGATTTGAGAAGCAGGCTGCAAGATTAG 1104 0.4275 MSQDKSRLKTRDQEWYFFSALDRKYGNGGRMNRATGRGYWKATGNDRPVRHESRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEELERSGIGSTQDAYVLCRVFHKNNIGPPNGQRYAPFIENEWDDTITLIPGKGTAFETPEIENGKFESDGYVASMDNSAQDRSSLDVDQLPIETRNLLAVCKKEMEEREMKERETEEKKMEDKGMEEYPPHDAASSKPFSFIYKRRRQNNPSSTYSNQSDVSTRTSQDPNSSTTTTAAMPLSTVKRSFLSSLVEYSLIESLEPKESPEVHLPETDAADVNSFPPGCLKVIQGMNQEIHKLSVERETQRFEMMSAQAMINILQSRIDLLNKENDDLRSRLQD* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00613 367 Gene3D NAC domain 2 112 IPR036093 GO:0003677|GO:0006355
Pte9g00613 367 Pfam No apical meristem (NAM) protein 9 84 IPR003441 GO:0003677|GO:0006355
Pte9g00613 367 SUPERFAMILY NAC domain 9 110 IPR036093 GO:0003677|GO:0006355
Pte9g00613 367 MobiDBLite consensus disorder prediction 189 216 - -
Pte9g00613 367 MobiDBLite consensus disorder prediction 189 264 - -
Pte9g00613 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 238 - -
Pte9g00613 367 MobiDBLite consensus disorder prediction 228 264 - -
Pte9g00613 367 ProSiteProfiles NAC domain profile. 1 109 IPR003441 GO:0003677|GO:0006355
Pte9g00613 367 Coils Coil 337 367 - -
Pte9g00613 367 Coils Coil 189 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00613 Pte-Chr9 9922549 9927339 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00613 6 364 NAC Transcription Factor Family AT3G10480 41.007 8.87e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte9g00613 NAM 1.4e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00613 - - qsa:O6P43_008641 454.907