Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte9g00608 | ATGGAAGCTGCAGAGGAACTCTCCTTAGGCTCAAATCATCACATCAGCAAAGGGAAGAGAACCAAACGCCAGAGGCCTCAATCTCCAATACCCTTTTCCGTTACTGCAAATTCTTCAAGTGGGGATTTGCTTGAAAAATATCATTATGATAACACCACTACAAACAACAATGCCTTCTCCCCCGCCACCACCACCTCTTCAGCTGAGTATTATTTTCAGGATAGTACAGAGGAAGAAGAAGACATGGCCCATTGTCTGATTCTTTTAGCTCAAGGTCAATCAAGGGAATCTTCATCAAAACAACGAGTTGAAGAAGATAGTGCATTGAATTATGCAAAGTATAGCAGTAGGAAATTTTTGGAAGCCGCTGCAACAACTGGGGGTGCTGGCAAAGCTGGGTATTATGTCTATGAATGCAAAACATGTAACAGAACTTTCCCTTCGTTTCAAGCTCTTGGAGGGCACAGAGCAAGTCACAAGAAACCTAAGAACATAGCCATGGCTGCAGCTGCTGCTGTTGAATTTGAAAAGAAACAACAAAAATTCATGTTGTCCTCAGATGAAGAAGAATCGCAGTTCAAGAAAAACAACAACGTGTACAACCAGCTTTCTCTTCAACTGAATAGTAGAGGAAATTTGAATAACAATAACAACAACAAGTCTAAGGTTCATGAATGTTCAATTTGTGGTACTGAATTCACATCTGGACAAGCGTTAGGCGGCCATATGCGACGGCACCGGGCACCAGTTAACGGAACAAGTACTGCATTGTCTTTGACACCAAAGGCTTTGGAGGCTGATGAAGAACAACCAAAGAAGCAAAAGGCCGTATTGTCTTTAGAATTAGATCTAAATCTTCCAGCCCCAGAAGATGATCAAAAGGAATCTAAATTTGTCTTTGCGTCCAAGAAACATCATCAGCAAAAACAGCAACAGCAACAATCAGATCTTGTCTTCTCCACCCCTGCTTTGGTGGATTGTCACTACTAA | 990 | 0.4182 | MEAAEELSLGSNHHISKGKRTKRQRPQSPIPFSVTANSSSGDLLEKYHYDNTTTNNNAFSPATTTSSAEYYFQDSTEEEEDMAHCLILLAQGQSRESSSKQRVEEDSALNYAKYSSRKFLEAAATTGGAGKAGYYVYECKTCNRTFPSFQALGGHRASHKKPKNIAMAAAAAVEFEKKQQKFMLSSDEEESQFKKNNNVYNQLSLQLNSRGNLNNNNNNKSKVHECSICGTEFTSGQALGGHMRRHRAPVNGTSTALSLTPKALEADEEQPKKQKAVLSLELDLNLPAPEDDQKESKFVFASKKHHQQKQQQQQSDLVFSTPALVDCHY* | 330 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte9g00608 | 329 | Pfam | C2H2-type zinc finger | 136 | 162 | - | - | |
| Pte9g00608 | 329 | Pfam | C2H2-type zinc finger | 223 | 249 | - | - | |
| Pte9g00608 | 329 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 226 | 246 | IPR013087 | - | |
| Pte9g00608 | 329 | Gene3D | Classic Zinc Finger | 135 | 246 | - | - | |
| Pte9g00608 | 329 | MobiDBLite | consensus disorder prediction | 286 | 317 | - | - | |
| Pte9g00608 | 329 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Pte9g00608 | 329 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 25 | 309 | - | - | |
| Pte9g00608 | 329 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 224 | 251 | IPR013087 | - | |
| Pte9g00608 | 329 | SUPERFAMILY | beta-beta-alpha zinc fingers | 136 | 246 | IPR036236 | - | |
| Pte9g00608 | 329 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 139 | 159 | IPR013087 | - | |
| Pte9g00608 | 329 | SMART | c2h2final6 | 137 | 159 | IPR013087 | - | |
| Pte9g00608 | 329 | SMART | c2h2final6 | 224 | 246 | IPR013087 | - | |
| Pte9g00608 | 329 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 137 | 164 | IPR013087 | - | |
| Pte9g00608 | 329 | MobiDBLite | consensus disorder prediction | 287 | 302 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte9g00608 | Pte-Chr9 | 9327801 | 9328790 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte9g00608 | 2 | 330 | C2H2 Transcription Factor Family | AT5G04390 | 43.799 | 2.29e-77 | 239 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pte9g00608 | zf-C2H2_6 | 7.6e-12 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte9g00608 | - | - | lja:Lj5g3v1698890.1 | 361.688 |