Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00608 ATGGAAGCTGCAGAGGAACTCTCCTTAGGCTCAAATCATCACATCAGCAAAGGGAAGAGAACCAAACGCCAGAGGCCTCAATCTCCAATACCCTTTTCCGTTACTGCAAATTCTTCAAGTGGGGATTTGCTTGAAAAATATCATTATGATAACACCACTACAAACAACAATGCCTTCTCCCCCGCCACCACCACCTCTTCAGCTGAGTATTATTTTCAGGATAGTACAGAGGAAGAAGAAGACATGGCCCATTGTCTGATTCTTTTAGCTCAAGGTCAATCAAGGGAATCTTCATCAAAACAACGAGTTGAAGAAGATAGTGCATTGAATTATGCAAAGTATAGCAGTAGGAAATTTTTGGAAGCCGCTGCAACAACTGGGGGTGCTGGCAAAGCTGGGTATTATGTCTATGAATGCAAAACATGTAACAGAACTTTCCCTTCGTTTCAAGCTCTTGGAGGGCACAGAGCAAGTCACAAGAAACCTAAGAACATAGCCATGGCTGCAGCTGCTGCTGTTGAATTTGAAAAGAAACAACAAAAATTCATGTTGTCCTCAGATGAAGAAGAATCGCAGTTCAAGAAAAACAACAACGTGTACAACCAGCTTTCTCTTCAACTGAATAGTAGAGGAAATTTGAATAACAATAACAACAACAAGTCTAAGGTTCATGAATGTTCAATTTGTGGTACTGAATTCACATCTGGACAAGCGTTAGGCGGCCATATGCGACGGCACCGGGCACCAGTTAACGGAACAAGTACTGCATTGTCTTTGACACCAAAGGCTTTGGAGGCTGATGAAGAACAACCAAAGAAGCAAAAGGCCGTATTGTCTTTAGAATTAGATCTAAATCTTCCAGCCCCAGAAGATGATCAAAAGGAATCTAAATTTGTCTTTGCGTCCAAGAAACATCATCAGCAAAAACAGCAACAGCAACAATCAGATCTTGTCTTCTCCACCCCTGCTTTGGTGGATTGTCACTACTAA 990 0.4182 MEAAEELSLGSNHHISKGKRTKRQRPQSPIPFSVTANSSSGDLLEKYHYDNTTTNNNAFSPATTTSSAEYYFQDSTEEEEDMAHCLILLAQGQSRESSSKQRVEEDSALNYAKYSSRKFLEAAATTGGAGKAGYYVYECKTCNRTFPSFQALGGHRASHKKPKNIAMAAAAAVEFEKKQQKFMLSSDEEESQFKKNNNVYNQLSLQLNSRGNLNNNNNNKSKVHECSICGTEFTSGQALGGHMRRHRAPVNGTSTALSLTPKALEADEEQPKKQKAVLSLELDLNLPAPEDDQKESKFVFASKKHHQQKQQQQQSDLVFSTPALVDCHY* 330
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00608 329 Pfam C2H2-type zinc finger 136 162 - -
Pte9g00608 329 Pfam C2H2-type zinc finger 223 249 - -
Pte9g00608 329 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
Pte9g00608 329 Gene3D Classic Zinc Finger 135 246 - -
Pte9g00608 329 MobiDBLite consensus disorder prediction 286 317 - -
Pte9g00608 329 MobiDBLite consensus disorder prediction 1 38 - -
Pte9g00608 329 PANTHER ZINC FINGER PROTEIN ZAT5 25 309 - -
Pte9g00608 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 251 IPR013087 -
Pte9g00608 329 SUPERFAMILY beta-beta-alpha zinc fingers 136 246 IPR036236 -
Pte9g00608 329 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Pte9g00608 329 SMART c2h2final6 137 159 IPR013087 -
Pte9g00608 329 SMART c2h2final6 224 246 IPR013087 -
Pte9g00608 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 164 IPR013087 -
Pte9g00608 329 MobiDBLite consensus disorder prediction 287 302 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte9g00608 Pte-Chr9 9327801 9328790 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00608 2 330 C2H2 Transcription Factor Family AT5G04390 43.799 2.29e-77 239
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte9g00608 zf-C2H2_6 7.6e-12 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00608 - - lja:Lj5g3v1698890.1 361.688