Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00607 ATGTTTCAGCCTGCACTTGCTCAGAAATTCATTGCAGACATTCTTATGGATCAACAAATTCACAATAATGGCCTGGACCAGAACATGGAGCATAAAGTTATAAGACAAGGAAAAGAACAACTTGGAACTTACTGTCTGAGAGTTCCAGAGAGCTTGGCGACCGGTGCAGGTAAAATCGTCTTGATAGCTTCTTCTTCTTCACTCTTCACTACAGTCACCGTTAATTTAGAGGGTAATATTGGAAGGTCTGCTTCCGAAAGTCGAACTCAACAAATCTTCATAGACTTCCAAGGCCTTCTCCGTAGTCGAACAACTTCAAGATTACATAGCAGAGAACTGGGACGGCAACTGCTTCCTAAGCTTTGCATTCAAGAGGAAGACACAGGACTGGAGGAAGCAATTTCTCAGGAGGAGTCAGGCTTCTTAAGTTTCACCTCTCCTCCTGTGAAAGCTGCCTTCAACCTCAGCCTTCCTCACCAACATCCCTACCCAGAAGCTGTAGCTCAAGATGTTCAACGGAGAGTCAATGAATCTGTGTCGAGACGAGACCTACTTTCTATTCAAGAAAAGGGCCAGTCTTGCCTCACCGGAAACCCCATTGACGATTGCTGGCGTTGTGACCCAAACTGGGCAGCAAACCGTCAAAAGCTCGCAGACTGTGGCATTGGTTTCGGAGCTGACGCCATGGGAGGCAAAGGTGGGCAGATCTATATAGTCACAGACTCTTCCGACTCCGACACGGTAAACCCGAAACCCGGCACACTCCGATTCGCAGTAATCCAAGATGAACCGCTCTGGATCGTATTCTCAGATTCCATGACCATACAGCTCAAACACGAACTCATCTTCAACAACTTCAAGACCATCGATGGCCGTGGTGCTGAAGTCCACATAGTCGGCAATGGCTGTATAACCCTCCAATACGTATCCAACGTCATCATCCACGGTGTTCACATCCACCATTGTAGACCTTCGGGGCACACGGACATTCGGTCCAGCCCGACCCACGTGGGCTGGAGAGGAAAATCCGACGGCGACGGCATCTCCATATTCAGTTCAAGAAAACTCTGGATCGACCATTGCACGCTGTCAGAATGTACGGACGGACTAATCGATGCGATAATGGGTTCCACAGGGATCACCATATCAAACAACCATTTCTCGCACCACAACGAGGTAATGCTGTTGGGTCATTCCGATTCGTATGAACCGGATTCTGGTATGCAGGTCACCATTGCGTTCAATCATTTTGGTGAAGCGCTGGTGCAGCGTATGCCACGGTGTAGAAGAGGATATATTCACGTTGTGAACAATGATTTCACTCAGTGGCAGATGTATGCCATTGGGGGCAGTGCTAATCCCACCATTAACAGTCAGAGCAATCGGTACACTGCTCCGACAAACCCTGATTCTAAAGAGGTGACAAAACGCTTGGACACTGAGCAGATGCAATGGGTGGGATGGAATTGGAGGACAGAAGGTGACATAATGGTGAATGGTGCTTTCTTTGTCCCCTCAGGTCAAGGGCTGAGCACTCAGTACGAAAGAGCCTCGAGTGTGGAACCCAAATCTGCTTCCTATATTAACCAGCTTACCATGAATGCTGGTGTCTTTGGCGACCCCAGGAATGACAATGGGGATGTTCAATTTCCCGGTGGAAACAGTGGGAGCGGAGGGAACAGTGCCAACAGCGGCGATGGCGGTGACTTCTTTGGAATGGTATTTGGTGGTGGAGGAACGAACAGTGTAGCTCCACCCTCCACATCTGAATTTTCAATCCTCCTCTATTTTCCGGTCCTTTTAATTTTGTACACTATCACCAACCTTGATGCCTTCATGTTGTTACATTTATTCTTATGA 1860 0.4806 MFQPALAQKFIADILMDQQIHNNGLDQNMEHKVIRQGKEQLGTYCLRVPESLATGAGKIVLIASSSSLFTTVTVNLEGNIGRSASESRTQQIFIDFQGLLRSRTTSRLHSRELGRQLLPKLCIQEEDTGLEEAISQEESGFLSFTSPPVKAAFNLSLPHQHPYPEAVAQDVQRRVNESVSRRDLLSIQEKGQSCLTGNPIDDCWRCDPNWAANRQKLADCGIGFGADAMGGKGGQIYIVTDSSDSDTVNPKPGTLRFAVIQDEPLWIVFSDSMTIQLKHELIFNNFKTIDGRGAEVHIVGNGCITLQYVSNVIIHGVHIHHCRPSGHTDIRSSPTHVGWRGKSDGDGISIFSSRKLWIDHCTLSECTDGLIDAIMGSTGITISNNHFSHHNEVMLLGHSDSYEPDSGMQVTIAFNHFGEALVQRMPRCRRGYIHVVNNDFTQWQMYAIGGSANPTINSQSNRYTAPTNPDSKEVTKRLDTEQMQWVGWNWRTEGDIMVNGAFFVPSGQGLSTQYERASSVEPKSASYINQLTMNAGVFGDPRNDNGDVQFPGGNSGSGGNSANSGDGGDFFGMVFGGGGTNSVAPPSTSEFSILLYFPVLLILYTITNLDAFMLLHLFL* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00607 619 Pfam Pectate lyase 283 462 IPR002022 -
Pte9g00607 619 MobiDBLite consensus disorder prediction 548 562 - -
Pte9g00607 619 Gene3D - 197 539 IPR012334 -
Pte9g00607 619 PANTHER PECTATE LYASE 18-RELATED 162 538 IPR045032 GO:0030570
Pte9g00607 619 MobiDBLite consensus disorder prediction 540 562 - -
Pte9g00607 619 SUPERFAMILY Pectin lyase-like 192 518 IPR011050 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 280 296 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 220 237 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 488 512 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 424 443 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 446 465 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 244 269 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 344 365 IPR018082 -
Pte9g00607 619 PRINTS Pollen allergen Amb family signature 517 540 IPR018082 -
Pte9g00607 619 SMART amb_all 272 469 IPR002022 -
Pte9g00607 619 FunFam Pectate lyase 197 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00607 Pte-Chr9 9284606 9293916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00607 161 614 Polysaccharide Lyase AT3G53190 65.944 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00607 K01728 - qsa:O6P43_008646 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00607 9 9284606 9293916 Pte9g00607 9 9284606 9293916 RCT