Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00596 ATGTCCGGGAAGGAAGAGAATCGAATATTTGTTGGAGGGCTGTCTTGGGATGTCACAGAGCGCCAGCTCGAGAATGCTTTTTCTCGTTACGGAAAAATTATTGAATGCCAGATTATGCTGGAAAGAGATACAGGTCGTCCACGAGGATTTGGGTTTATTACATTTGCAGATCGTAGAGGAATGGAGGATGCAATAAAAGAAATGCATGGAAGAGAATTGGGTGACCGTGCCATCTCTGTAAATAGAGCCCAGCCAAAAATGGTGTCAGATGACCTGGACCAAGGTTATAGGCGAGGCTCTTCTGGTGGTCGAGGAAGCTATGGGGTAGACAGGTCCTCTGGACAAGATGACTGCTTCAGATGTGGACGGCCTGGGCACTGGGCTCGAGACTGCCCATCATCAGGTGGTGGTGGTGATGGAGGCGGCTCATTCTCTTCACGTTCTAGGTTTGGAGGAGCTGGGGGCCACAATGATCGCTTTCCTGTTGAGCGTGACCGATTCATTGATGATCGCTATGATACTGGACGTAATGGTGATAGGGAACGTTTTGATAGCAGAGATCAGAAGTATGTTAGTCGTGATCGTTATGCTAGTGACAGGTACCCTGCTGGTGTAGATCATTTTCCAAGTGATAGATATGGGAGTTATGATCGCTATCCTCAAAATGGTTATGGCAAAGATAGAGGTTATGAACGGTATGGTGGACCAAGAGGTGGCAATGACAGATATGGGACAGGCTTGCCACCACGCGAGGAACCAAGGACTTATAGGAATAGGCCAGGTCCTTATGACCGCCCCACTAGGGGTGGCCGTCCATCTTTCGATCGCTATTGA 834 0.4868 MSGKEENRIFVGGLSWDVTERQLENAFSRYGKIIECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGRELGDRAISVNRAQPKMVSDDLDQGYRRGSSGGRGSYGVDRSSGQDDCFRCGRPGHWARDCPSSGGGGDGGGSFSSRSRFGGAGGHNDRFPVERDRFIDDRYDTGRNGDRERFDSRDQKYVSRDRYASDRYPAGVDHFPSDRYGSYDRYPQNGYGKDRGYERYGGPRGGNDRYGTGLPPREEPRTYRNRPGPYDRPTRGGRPSFDRY* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00596 277 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Pte9g00596 277 SUPERFAMILY Retrovirus zinc finger-like domains 108 134 IPR036875 GO:0003676|GO:0008270
Pte9g00596 277 Pfam Zinc knuckle 118 133 IPR001878 GO:0003676|GO:0008270
Pte9g00596 277 Gene3D - 1 113 IPR012677 -
Pte9g00596 277 Gene3D - 114 140 - -
Pte9g00596 277 ProSiteProfiles Zinc finger CCHC-type profile. 118 133 IPR001878 GO:0003676|GO:0008270
Pte9g00596 277 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 273 - -
Pte9g00596 277 SMART c2hcfinal6 117 133 IPR001878 GO:0003676|GO:0008270
Pte9g00596 277 MobiDBLite consensus disorder prediction 89 114 - -
Pte9g00596 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Pte9g00596 277 MobiDBLite consensus disorder prediction 158 201 - -
Pte9g00596 277 MobiDBLite consensus disorder prediction 129 277 - -
Pte9g00596 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Pte9g00596 277 SMART rrm1_1 8 81 IPR000504 GO:0003723
Pte9g00596 277 FunFam glycine-rich RNA-binding protein RZ1C 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00596 Pte-Chr9 9021639 9026858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00596 9 86 C2H2 Transcription Factor Family AT2G19380 41.026 3.61e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00596 - - gmx:100809519 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00596 9 9021639 9026858 Pte9g00596 9 9021639 9026858 RCT