Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00571 ATGATTGGACCAAACTTCATGGATGAGATTGACTGCGGCAGCTTCTTCGACCATATCGATGACCTTCTCGACTTCCCAGCTGAAGACGTCGATGTCCCCTTACCCACTGTCGGCAACTGTGACTCGTTGTCTAACATTTGGAACCCCGAGTCGGACTCGGTTTTCTCTAACAACAGCGCCTCCCACCTCTCAGCCGAGCTCTCTGTTCCGTATGAGGACATTGTCCAGTTGGAATGGATGTCAAAGTTTGTGGAGGACTCTTTTGAGGGTGGGAGTCTCACCATGAAGAAAGAGGATGTATCCTCTGATGCCAATAAGGAGGAATCAGGGCACCAGCAGTTTCAGACATCCAGCCCAGTTTCAGTGCTAGAAAGCAGCAGCTCCTATTCCAGTGAGAAACCAGCAGGCTACAGCCCCGATGTTCTCACAGCAGGGCGCTGTGGACGTGCACGAAGTAAGCGCCCACGCCCTGCAACTTTCATTCCCCGTCCGGGAATTCAGCTTATTTCCCCAGCCTCCTCTATTGGTGAAACGCCACAGCTGTTTGTCTCCCCAAAAGCATCTTCCGATTCAGAGAATTTCCCTGAGTCTCGCCCTGTCGTCAGAAAGGTTCCGAAACAAGTTTCTGCACAGTATAAGAAGAAAATAAAATTCTCAGTCCCTTTAGCTCCTGCAGAGACACAACAATCTTCTGCATCGCAGGCTGTGCGGAAATGCTTGCATTGTGAGATAACCAAGACTCCGCAATGGCGGGCAGGGCCAATGGGACCAAAAACACTTTGCAATGCATGCGGTGTTCGGTACAAGTCTGGCCGACTTTTCCCTGAATACCGTCCTGCAGCTAGTCCAACCTTTGTCCCAGCCATTCACTCCAACTCTCACAAGAAAGTCTTGGAAATGAGAACCAAGACCAAAGGCACTGCTCTTGACGCAAATGCAACAGATTCAAGTGATTTCCCAGAACTTATTCCAAACACCAATAGCAGCCTGACTCTTGATTACGTGTAA 1008 0.498 MIGPNFMDEIDCGSFFDHIDDLLDFPAEDVDVPLPTVGNCDSLSNIWNPESDSVFSNNSASHLSAELSVPYEDIVQLEWMSKFVEDSFEGGSLTMKKEDVSSDANKEESGHQQFQTSSPVSVLESSSSYSSEKPAGYSPDVLTAGRCGRARSKRPRPATFIPRPGIQLISPASSIGETPQLFVSPKASSDSENFPESRPVVRKVPKQVSAQYKKKIKFSVPLAPAETQQSSASQAVRKCLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVPAIHSNSHKKVLEMRTKTKGTALDANATDSSDFPELIPNTNSSLTLDYV* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00571 335 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 237 296 - -
Pte9g00571 335 FunFam GATA transcription factor 228 315 - -
Pte9g00571 335 Gene3D - 233 283 IPR013088 GO:0006355|GO:0008270
Pte9g00571 335 MobiDBLite consensus disorder prediction 98 164 - -
Pte9g00571 335 SMART GATA_3 233 283 IPR000679 GO:0006355|GO:0043565
Pte9g00571 335 CDD ZnF_GATA 238 295 IPR000679 GO:0006355|GO:0043565
Pte9g00571 335 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Pte9g00571 335 PANTHER GATA TRANSCRIPTION FACTOR 16 305 - -
Pte9g00571 335 Pfam GATA zinc finger 239 272 IPR000679 GO:0006355|GO:0043565
Pte9g00571 335 PIRSF Txn_fac_GATA_plant 2 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte9g00571 335 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Pte9g00571 335 MobiDBLite consensus disorder prediction 107 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00571 Pte-Chr9 8344073 8347691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00571 19 303 C2C2-Gata Transcription Factor Family AT4G32890 37.329 1.03e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte9g00571 GATA 1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00571 - - qsa:O6P43_005032 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte16g00523 16 8929339 8963995 Pte9g00571 9 8344073 8347691 RCT
Pte9g00571 9 8344073 8347691 Pte9g00571 9 8344073 8347691 RCT