Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00570 ATGGATTCTCTCAAAAGCAACTCAGTAAACAGCTTGGATTCTCAACTATGGCATGCTTGTGCTGGTGGGTTGGTTCAAATTCCACCCATCAACTCCAAAGTCATATACTTTCCTCAAGGCCACGCAGAACATGCTCTTGAGAAAGTAGATTTTGGGAGTTGTAGGATCCCAAGTCTTGTACCGTGCAAGGTATCTGCTATAACATACATGGCAGATCCTCACACAGATGAAGTGTATGTGAAAATGAGGCTGACACCTCTGAGAGAGAGTGAAATGACTCTTGAGGACGATTTTCTTGCGGGGAACTTCGGATTTGGGAGTCAGGAGAAACCTGCATCGTTTGCAAAAACGTTGACACAGTCTGATGCAAACAATGGTGGAGGATTCTCTGTGCCTCGGTACTGTGCAGAGACTATATTTCCACGCTTGGATTACACAGCTGAACCTCCTGTTCAAACCATTATTGCGAAGGATATGCTTGGTCAGAACTGGAAATTTAGGCACATCTATAGAGGGACGCCTCGTCGTCATCTTTTGACAACGGGGTGGAGCAATTTTGTGAATCATAAGAAACTTGTTGCTGGAGACTCAATAGTGTTTCTCAGGGCAGAGAATGGAGATCTTTGTGTTGGGATTAGGAGAGCTAGGAAAGGAATTGGGGGTGGAACTGAGTACTCATATGGATGGAGCCAGAGAATTGAGGATGAAAATATTGCATCAATCAAAAACTACAATGTGGATGTGACTGGAAGAGTGACAGCTGAGTCTGTCAGTCAAGCAGTGACACTTGCGGTTAATGGCAAACCCTTTGAGGTTGTGTACTATCCAAGTGCTAGTTCCCCAGAGTTTTGTATTAGGGCCTCTGCTGTGAGAGCTGCAATGCAATTCCAATGGTGCCCTGGGATGAGATTTAAAATGCCTTTTGAAACTGAGGATTCGAGTCGCATTAGCTGGTTTATGGGCACAATATCTTCTGTTGAGGAAGCAGATCCAACTCGTTGGCCTGGTTCTCCATGGCGGCTTCTACAGGTAGAATGGGATGAGCCAGATTTGCTTCAGAATGTCAAGAGAGTCAATCCATGGTTGGTTGAATTAGTCTCGACCATGCCGACCTACCATCATCTCTCTCCCTTCTCACCACCAACAAAGAAAATGCGGTTTCCACCACAGCAGGATGTTCCGGTCATGAACCAAATTCCGGTGACAGCATTTGCAAATAATGTCACTAATCACGGCAACCCCTTCTGTAGTGTTCAGGATAACACAACAGGCATCCAGGGAGTCAGGCATGCACAAGATTTTAGTCTCACGAAATTACTGACAGACGATTTTTCTTTTGGATTTTCACCCCTGGATCATGTTGTCCAGCCTTCTAGGCATCTAAGTGGCAGCATTTTAGACAAGAAAAAGGACAATACTTACTCATTTCTGACTGCTAAGTATCCGAATGAATGTTTGAAGGCACGGAATGAAACAAAGGCAACAAAGGCAACGCATATCTTTTTGTTTGGTCAGCTTATTCGCACTGAACCGAAGAGTTGTAAGAGCTCCTCTTCTGATACATCTGATTTAGAAGAGAACTCTGGTAAGACAACAAATGTGTCTGATGGTTCTGACTCAGCATTGTGTCATAACAATTCCATGGAGAATACCATTAAAGGGGTTCCATGCTGGCTCAAGGAGAACCCAAAGTCTGGTCTTAAGATGGAGGGTTATGGTAATTGTAAGATTATGATGCAGAAAGAGGAAGTGGGGTTAACACCAAATCTATCACTATTTGGCTCATATGATCAACTCCATGGTAATGTTCTGTCTACAATGTTTGGCTTAAAAGCTTCAGAGGTGCTGAGCAATGTTATTTAA 1863 0.438 MDSLKSNSVNSLDSQLWHACAGGLVQIPPINSKVIYFPQGHAEHALEKVDFGSCRIPSLVPCKVSAITYMADPHTDEVYVKMRLTPLRESEMTLEDDFLAGNFGFGSQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTAEPPVQTIIAKDMLGQNWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRARKGIGGGTEYSYGWSQRIEDENIASIKNYNVDVTGRVTAESVSQAVTLAVNGKPFEVVYYPSASSPEFCIRASAVRAAMQFQWCPGMRFKMPFETEDSSRISWFMGTISSVEEADPTRWPGSPWRLLQVEWDEPDLLQNVKRVNPWLVELVSTMPTYHHLSPFSPPTKKMRFPPQQDVPVMNQIPVTAFANNVTNHGNPFCSVQDNTTGIQGVRHAQDFSLTKLLTDDFSFGFSPLDHVVQPSRHLSGSILDKKKDNTYSFLTAKYPNECLKARNETKATKATHIFLFGQLIRTEPKSCKSSSSDTSDLEENSGKTTNVSDGSDSALCHNNSMENTIKGVPCWLKENPKSGLKMEGYGNCKIMMQKEEVGLTPNLSLFGSYDQLHGNVLSTMFGLKASEVLSNVI* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00570 620 MobiDBLite consensus disorder prediction 512 542 - -
Pte9g00570 620 Pfam B3 DNA binding domain 114 215 IPR003340 GO:0003677
Pte9g00570 620 CDD B3_DNA 113 214 IPR003340 GO:0003677
Pte9g00570 620 SUPERFAMILY DNA-binding pseudobarrel domain 106 216 IPR015300 -
Pte9g00570 620 Gene3D - 112 215 IPR015300 -
Pte9g00570 620 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Pte9g00570 620 Gene3D - 298 371 - -
Pte9g00570 620 SMART B3_2 114 216 IPR003340 GO:0003677
Pte9g00570 620 FunFam Auxin response factor 298 371 - -
Pte9g00570 620 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte9g00570 620 FunFam Auxin response factor 112 216 - -
Pte9g00570 620 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 11 612 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00570 Pte-Chr9 8333238 8335526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00570 1 620 B3 DNA Binding Superfamily AT4G30080 53.655 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte9g00570 B3 2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00570 - - qsa:O6P43_005033 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte9g00570 9 8333238 8335526 Pte9g00570 9 8333238 8335526 RCT