Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00561 ATGACAAAGAACACTGAAATTGCTGAGCGTGGGTCGTTCTCTGCCAAGGATTATCATGACCCACCTCCAGCTCCTCTCTTTGACATGGTAGAGCTAGGAAAATGGTCCTTTTACAGAGCTTTAATAGCGGAGTTCATTGCTACTCTGCTTTTTCTCTACATCACAGTGCTTACTGTCATTGGGTACAAAAGTCAGACTGATCCTAACGCTCATGCTGACGCTTGTGCTGGAGTTGGTGTTCTTGGCATCGCTTGGGCTTTTGGTGGTATGATCTTCATTCTTGTCTACTGCACTGCAGGAATTTCAGGGGGTCACATTAACCCTGCAGTGACATTTGGCCTGTTCTTGGCTCGCAAAGTGTCGCTGATCCGAGCGGTGATGTACATGGTGGCTCAGTGCTTGGGAGCTATCTGTGGTGTTGGGCTCGTCAAGGCCTTCCAAAGTGCTTATTACACTAGGTATGGTGGTGGTGCTAATGCTCTTTCCGCTGGCTACAGCAAAGGAGTTGGCTTGGGTGCTGAGATCATTGGAACCTTTGTGTTGGTGTACACAGTATTCTCTGCCACTGATCCCAAGAGAAATGCCAGAGACTCTCATGTCCCTGTTTTAGCTCCACTTCCAATTGGATTTGCTGTTTTCATGGTTCACTTAGCCACCATTCCCATCACTGGCACTGGCATCAACCCAGCTAGGAGTCTTGGTGCCGCTGTTATCTTCAACCAAGGCAAGGCCTGGCATAACCATTGGATCTTCTGGGTCGGACCATTCATTGGTGCAGCTATTGCAGCCTTCTACCACCAATTCATATTGAGGGCAGGAGCTGTTAAAGCCTTAGGTTCCTTCAGGAGTAACCCCACTGTCTAA 864 0.485 MTKNTEIAERGSFSAKDYHDPPPAPLFDMVELGKWSFYRALIAEFIATLLFLYITVLTVIGYKSQTDPNAHADACAGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAVMYMVAQCLGAICGVGLVKAFQSAYYTRYGGGANALSAGYSKGVGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNQGKAWHNHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00561 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Pte9g00561 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 276 IPR034294 -
Pte9g00561 287 SUPERFAMILY Aquaporin-like 30 271 IPR023271 -
Pte9g00561 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Pte9g00561 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte9g00561 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00561 Pte-Chr9 8220530 8223669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00561 1 288 Major Intrinsic Protein MIP AT3G54820 84.028 2.44e-180 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00561 K09872 - mof:131165648 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte18g01623 18 27656203 27657568 Pte9g00561 9 8220530 8223669 RCT
Pte15g01119 15 8381336 8383204 Pte9g00561 9 8220530 8223669 RCT
Pte9g00561 9 8220530 8223669 Pte9g00561 9 8220530 8223669 RCT