Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte9g00533 ATGGATGCCACCACTCCCAAGTACTCAAAGGCTAGGTATGATGAAATTGTCAAGGAAGTCTCTTCCTACCTTAAGAAGGTCGGGTACAACCCAGACAAGATTGCTTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTGGACTGGTACAAGGGTCCAACCCTCCTCGAGGCCCTTGACCAAATCAATGAGCCCAAGAGGCCTTCTGACAAGCCCCTCCGCCTCCCACTTCAGGACGTGTACAAGATTGGAGGTATTGGAACTGTTCCAGTGGGACGAGTTGAAACTGGTGTCTTGAAGCCTGGTATGGTTATTACATTCGGTCCAACTGGACTGACCACTGAAGTTAAGTCTGTGGAGATGCACCACGAAGCACTCCAAGAGGCCCTTCCTGGTGACAATGTGGGTTTCAATGTCAAGAACGTCGCCGTGAAGGATCTGAAGCGTGGTTTTGTGGCATCCAACTCCAAGGATGACCCTGCAAAAGAGGCTGCGAACTTCACTTCTCAAGTCATCATCATGAACCATCCTGGTCAGATTGGAAATGGATATGCCCCTGTCCTTGACTGCCACACTTCACACATTGCGGTGAAATTTGGGGAGATATTGACCAAGATTGACAGGCGATCTGGTAAGGAGCTTGAGAAGGAGCCAAAATTCTTGAAGAATGGTGATGCTGGTATGGTGAAGATGATTCCCACCAAGCCCATGGTGGTTGAGACCTTCTCAGAGTATCCTCCTCTTGGACGATTTGCTGTGAGGGACATGCGTCAAACTGTTGCTGTGGGTGTCATCAAGAGTGTGGAGAAGAAGGATCCTTCTGGTGCTAAGGTGACGAAGGCTGCTGCAAAGAAGGGTGCCAAGTGA 888 0.4966 MDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVITFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFGEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKAAAKKGAK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte9g00533 295 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 172 275 IPR009001 -
Pte9g00533 295 CDD EF1_alpha_II 76 166 - -
Pte9g00533 295 FunFam Elongation factor 1-alpha 169 276 - -
Pte9g00533 295 FunFam Elongation factor 1-alpha 75 162 - -
Pte9g00533 295 CDD EF1_alpha_III 169 272 - -
Pte9g00533 295 SUPERFAMILY Translation proteins 77 206 IPR009000 -
Pte9g00533 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 95 IPR027417 -
Pte9g00533 295 Gene3D Translation factors 75 162 - -
Pte9g00533 295 Pfam Elongation factor Tu C-terminal domain 167 275 IPR004160 -
Pte9g00533 295 PANTHER ELONGATION FACTOR 1 ALPHA 26 292 - -
Pte9g00533 295 Pfam Elongation factor Tu domain 2 94 159 IPR004161 GO:0005525
Pte9g00533 295 Gene3D Translation factors 169 276 - -
Pte9g00533 295 Gene3D - 1 72 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte9g00533 Pte-Chr9 7116010 7117445 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte9g00533 1 286 Eukaryotic Initiation Factors Gene Family AT5G60390 94.755 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte9g00533 K03231 - pvy:116114392 562.377